FC869148

Overview
NameFC869148
Unique NameFC869148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: AUHM_MOUSE (Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  298 KNALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            KNAL  ++L+ L  A + +  D     ++IRS VP +FCAGADLKER +M  SE+  +V+ +RS  + +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG GGTQRLPR  G
Sbjct:   75 KNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIG 204          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: AUHM_HUMAN (Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:  298 KNALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            KN+L  ++++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  + +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG GGTQRLPR  G
Sbjct:  100 KNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIG 229          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: AUHM_DICDI (Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.218e-26
Identity = 61/130 (46.92%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  298 KNALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            KNALG +++   +     +       VV++RS V  VFC+GADLKER  MS  E   +V++LRS+F+ LE L +PTIA I+             CD R+  +++ +GLPETGLAIIPGAGGTQRLPR+ G
Sbjct:   68 KNALGKNLMNQFRSHLNELRFCPDTRVVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVGGGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIG 197          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            NAL  +MLR L+   + I  +S+   V++  +  K FCAGADLKER ++   ++   V+ ++ T + L+ALP P IA I+             CDLRI  EAA+LGLPETGLAIIPGAGGTQRLPR+ G
Sbjct:   26 NALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKEDQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIG 154          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: ECHD2_MOUSE (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  298 KNALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            +NALG   +  L  A   + ED    V++ RS+V  VFCAGADLKER QMS  E+  +V  LR   S + A P+PTIA +D             CDLRI   +A++GL ET   ++PGAGGTQRLPR  G
Sbjct:   57 RNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLG 186          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: ECHD2_BOVIN (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  298 KNALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            +NALG   +  L  A   + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A P PTIA +D             CDLR+   +A++GL ET   ++PGAGGTQRLPR  G
Sbjct:   57 RNALGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLG 186          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: ECHD2_HUMAN (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 57/130 (43.85%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  298 KNALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            +NALG   +  L      + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A P PTIA +D             CDLR+   +A++GL ET   ++PGAGGTQRLPR  G
Sbjct:   53 RNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLG 182          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: CRT_CLOAB (3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            NAL +D L+ + +    I  DS    V++  +  K F AGAD+ E ++M+  E   +       F  LE L  P IA ++             CD+RI    A  G PE GL I PG GGTQRL R+ G
Sbjct:   26 NALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKEMNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQPEVGLGITPGFGGTQRLSRLVG 154          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADJ_PECCP (Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L ++  + +   FE   + ++   +++ SS P  F AGAD+    Q  S  +        + TF  + ALP P +A I              CD R+C   E  +LGLPE  L ++PG+GGTQRLPR+ G
Sbjct:   39 NTLKSEFAQQILSVFEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIG 170          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_SHEPA (Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 47/132 (35.61%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N    + +  L  A ++I +DSS   +M+ SS    F  GAD+ E   +   E   +  ++      F+ LE LP PTI+ I+              D RI    A +GLPET L IIPG GGT RLPR+ G
Sbjct:   29 NKFDRETIDSLNAALDSIKQDSSIKALML-SSAKDAFVVGADITEFLGLFAEEDTVLQSWLEQANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRIADTTARIGLPETKLGIIPGFGGTVRLPRVIG 159          
The following BLAST results are available for this feature:
BLAST of FC869148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AUHM_MOUSE1.089e-2646.15Methylglutaconyl-CoA hydratase, mitochondrial OS=M... [more]
AUHM_HUMAN2.426e-2644.62Methylglutaconyl-CoA hydratase, mitochondrial OS=H... [more]
AUHM_DICDI9.218e-2646.92Methylglutaconyl-CoA hydratase, mitochondrial OS=D... [more]
YNGF_BACSU1.204e-2548.06Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
ECHD2_MOUSE5.975e-2546.15Enoyl-CoA hydratase domain-containing protein 2, m... [more]
ECHD2_BOVIN2.965e-2444.62Enoyl-CoA hydratase domain-containing protein 2, m... [more]
ECHD2_HUMAN8.628e-2443.85Enoyl-CoA hydratase domain-containing protein 2, m... [more]
CRT_CLOAB2.782e-1435.663-hydroxybutyryl-CoA dehydratase OS=Clostridium ac... [more]
FADJ_PECCP4.017e-1333.33Fatty acid oxidation complex subunit alpha OS=Pect... [more]
FADB_SHEPA5.246e-1335.61Fatty acid oxidation complex subunit alpha OS=Shew... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009A08EF AbioticL1 Citrus clementina cDNA clone C31009A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869148 ID=FC869148; Name=FC869148; organism=Citrus clementina; type=EST; length=698bp
GGTGCTCGCGTGGGATCAATTTCGAGTCAACAATGAGTGCTTTAACGAAG
CTAACGAAAACACTTGCACATCACTGCGTCAAAAAATCTAAAACCCATTG
GTGCAAACCTGCGCAGCCACTTTTAAATTTATTAATCTCTGAAAATATTG
TTAACATCAACACTTCTCAGTTTCATCAGTACCAAAGCCGTAGAACTCTC
ATTCTAGATTCCGCTTCCTCCGAATCTGTCCAGCTTCAGCGAATCTCCGA
TTCTGATATCGGAATAATTGAGGTTAGTTTAAACAGACCTGCGGCAAAAA
AATGCGCTTGGAACGGATATGTTGAGAGGCTTAAAGCATGCATTTGAAAC
TATCAGTGAGGATTCCTCTGCTAATGTTGTCATGATACGTAGCTCGGTTC
CTAAAGTGTTCTGTGCTGGAGCTGATTTGAAGGAACGCAGGCAAATGAGT
CCATCTGAGATTCATTTTTATGTCAACACATTGCGATCTACATTCTCCTT
CTTAGAGGCACTTCCTATTCCAACCATTGCTGTTATTGATGGAGCAGCAT
TGGGTGGTGGACTTGAAATGGCACTAGCATGTGATCTTCGCATCTGTGGA
GAAGCAGCACTATTGGGCTTGCCTGAAACAGGACTTGCTATAATTCCTGG
GGCGGGTGGGACACAGCGGCTTCCAAGAATAGNTGGAAATCAGTAGCA
back to top