FC869154

Overview
NameFC869154
Unique NameFC869154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9400 contig Ccv1_Contig9400:62..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.599e-70
Identity = 131/189 (69.31%), Postives = 153/189 (80.95%), Query Frame = 3
Query:   84 MSMASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDGLDYEVFCSKRSEALLNLL 650
            M+   Q +REW GI  F PATQT          QE+VN+LTILVMGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PDGL Y+ F SKRSEALL ++
Sbjct:    1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVV 189          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.433e-70
Identity = 130/186 (69.89%), Postives = 155/186 (83.33%), Query Frame = 3
Query:   93 ASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDGLDYEVFCSKRSEALLNLL 650
            A Q +REW+GIQQFPPATQ+          +E+V++LT+LVMGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN  AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHAQ S PDGL+Y  F SKRS ALL ++
Sbjct:    3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLKVI 188          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.356e-63
Identity = 116/183 (63.39%), Postives = 146/183 (79.78%), Query Frame = 3
Query:  102 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDGLDYEVFCSKRSEALLNLL 650
            ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SKRS++LL  +
Sbjct:    4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 55/162 (33.95%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  204 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDG-----LDYEVFCSKRSEALLNLLAPVPG 665
            TI+V+GK GVGKS+T+NSI  E  ++   FQ    +   +     G  + ++DTPGL+      + N   ++ ++ F+     D++LY+DRLD+   D+ D  + R ITD FG  IW  A++ LTHA  + PDG       Y++F ++RS  +   +    G
Sbjct:  458 TIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG 619          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  183 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDG-----LDYEVFCSKRSEALLNLLAPVPG 665
            +E + +L ILV+GK GVGKS+T+NSI+G +  ++  F         +S +  G  +  +DTPGL         N   +  +K+ +     D++LYVDRLD    D  +  + R IT + G  IWK A++ LTHA  + PDG     L Y+VF ++ S  +   +    G
Sbjct:  850 EELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVG 1018          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 57/162 (35.19%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  204 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDG-----LDYEVFCSKRSEALLNLLAPVPG 665
            TI+V+GK GVGKS+T+NSI  E       FQ    R   V     G  + ++DTPGL+        N   +  +K F+     D++LY+DRLD+   D+ D  + R I+D FG  IW  A++ LTHA    PDG       Y++F ++RS  +   +    G
Sbjct:  576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG 737          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: GTPA_DICDI (GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 50/135 (37.04%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  195 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 593
            N   +L++G+ GVGKSST+N++ G   + V + +S    P   SR   GF LNI+DTPG ++  G  V+ + +  I+R+L  KTI  +L+V++    R D   + +    T+  G Q+W+ A +VLT+A   LPD
Sbjct:  150 NECNVLLLGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLTYANSVLPD 283          
BLAST of FC869154 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  198 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL----IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP----DGLDYEVFCSKRSEAL 638
            +L ILV+GK GVGKS+T+NSI G+       F+    R   V  + +G  +  +DTPG           N   +  IKR++  +  DV+LY+DRLD+  +   D  + + IT+ FG  IW   ++V+TH+  +        ++YE +  +R + +
Sbjct:  166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVV 320          
The following BLAST results are available for this feature:
BLAST of FC869154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TOC34_PEA2.599e-7069.31Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TOC34_ARATH4.433e-7069.89Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
TOC33_ARATH2.356e-6363.39Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TC120_ARATH8.478e-2133.95Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC159_ARATH7.177e-2033.73Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC132_ARATH1.224e-1935.19Translocase of chloroplast 132, chloroplastic OS=A... [more]
GTPA_DICDI1.146e-1737.04GTP-binding protein A OS=Dictyostelium discoideum ... [more]
TOC90_ARATH4.075e-1531.61Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC31009B02EF AbioticL1 Citrus clementina cDNA clone C31009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869154 ID=FC869154; Name=FC869154; organism=Citrus clementina; type=EST; length=681bp
TTTGGGTTTAATTCCTCAGCAGTAGCAGACGAGGTGCAAACAAATTCCCC
AAAAACCCAAATTCACACTCTCCGGACAGACATATGTCTATGGCGTCTCA
AGTAATACGTGAATGGATGGGAATTCAGCAGTTCCCACCTGCCACTCAAA
CAAAATTGCTTGAATTGTTGGGAAAACTTAAACAAGAGAATGTGAACACA
TTGACCATACTTGTGATGGGGAAGGGTGGCGTTGGGAAATCATCAACTGT
AAACTCTATCATAGGAGAGAAAGCGGTTACTGTTAGTACGTTTCAGTCGG
AAGGACCAAGACCTGTGATGGTTTCCCGCTCCAGGGCTGGATTTACATTG
AACATTGTTGACACTCCTGGGCTCATAGAAGGTGGATATGTCAATTATCA
TGCTATTCAGCTAATCAAACGTTTCCTTCTGAACAAAACTATCGATGTTC
TACTGTATGTCGACCGTCTGGATGTTTATAGGGTAGATAATTTGGATAAG
CAGATTACTAGAGCCATAACGGATAATTTTGGTGAACAAATATGGAAGAG
GGCTTTGATTGTTCTCACACATGCTCAACTCTCATTGCCAGACGGATTAG
ATTATGAAGTTTTTTGCTCCAAAAGGTCAGAGGCTCTTCTAAATTTGTTA
GCCCCAGTACCTGGATGAAGAAAAAAACATT
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