FC869162

Overview
NameFC869162
Unique NameFC869162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 7.328e-78
Identity = 133/181 (73.48%), Postives = 152/181 (83.98%), Query Frame = 3
Query:  117 MVKMSLIFSLFVGLLMV----GLVSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQ 647
            MV M L   + + +++V      VS AKFD+LY++SWA +H   +G+  KL LDNYSGAGF S+SKYLFGKVSIQIKLV GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN+YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQ
Sbjct:    1 MVGMDLFKCVMMIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQ 181          

HSP 2 Score: 37.3502 bits (85), Expect = 7.328e-78
Identity = 15/17 (88.24%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  638 KGPAMGVYSSIWNADDW 688
            K  AMGVYSSIWNADDW
Sbjct:  179 KDQAMGVYSSIWNADDW 195          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.416e-54
Identity = 91/180 (50.56%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  117 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            ++  +++ +L V + M G   S  F++ +  +W  +   +   G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS+GP H+E DFEFLGN TG+PY++ TNV+  G GNREQ+  LWFDPTK FHTYSL+W  + ++F+VD  PIRV  N E  G+PFPK+QP
Sbjct:    4 ILNRTVLMTLLV-VTMAGTAFSGSFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQP 182          

HSP 2 Score: 34.2686 bits (77), Expect = 1.416e-54
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+WNADDW
Sbjct:  178 PKNQPMKIYSSLWNADDW 195          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 4.446e-53
Identity = 92/157 (58.60%), Postives = 116/157 (73.89%), Query Frame = 3
Query:  186 KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            +F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKE+H YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQP
Sbjct:   32 QFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQP 188          

HSP 2 Score: 29.6462 bits (65), Expect = 4.446e-53
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +Y+S+WNADDW
Sbjct:  184 PFDQPMKIYNSLWNADDW 201          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.448e-53
Identity = 90/177 (50.85%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  147 FVGLLMVGLVSSA-------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            F  L++VG+V S         F   +  +W  +  +    G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS GP H+E DFEFLGN +G+PY++ TN++  G GNREQ+  LWFDPT+ FHTYS++W  + ++FLVD TPIRV  N E  G+PFPK+QP
Sbjct:   11 FYVLMLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQP 187          

HSP 2 Score: 34.2686 bits (77), Expect = 4.448e-53
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+WNADDW
Sbjct:  183 PKNQPMRIYSSLWNADDW 200          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.848e-53
Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 3
Query:  201 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            Y  +WAF+H++Y   G  + L LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G GNREQR++LWFDP+K++H+YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +QP
Sbjct:   36 YFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQP 187          

HSP 2 Score: 31.187 bits (69), Expect = 9.848e-53
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +YSS+WNADDW
Sbjct:  183 PFNQPMKIYSSLWNADDW 200          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.833e-52
Identity = 91/179 (50.84%), Postives = 124/179 (69.27%), Query Frame = 3
Query:  129 SLIFSLFVGLLMVGLVSSA---KFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            S + ++   +L+V L  SA    F D +  +W  +   +   G+ L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS G  H+E DFEFLGN TG+PY++ TNV+  G G+REQ+  LWFDPTK FHTYS++W  + ++FLVD  PIRV  N E  G+PFPK QP
Sbjct:    5 SSLTTIVATVLLVTLFGSAYASNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQP 183          

HSP 2 Score: 34.2686 bits (77), Expect = 4.833e-52
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+WNADDW
Sbjct:  179 PKSQPMRIYSSLWNADDW 196          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.298e-52
Identity = 96/182 (52.75%), Postives = 124/182 (68.13%), Query Frame = 3
Query:  144 LFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            L + L++V L SSA            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF +K  YLFG  S+ IK+V GDSAGTVTAF +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +QP
Sbjct:    6 LILCLVLVSLASSALCAAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQP 187          

HSP 2 Score: 30.4166 bits (67), Expect = 6.298e-52
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M VY+S+WNADDW
Sbjct:  183 PFNQPMKVYNSLWNADDW 200          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.028e-51
Identity = 94/183 (51.37%), Postives = 124/183 (67.76%), Query Frame = 3
Query:  141 SLFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            SL+  L+++ L S++            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IKLV GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPT ++H YS+LWN  Q+VF VD+ PIRV  N    G+ FP +QP
Sbjct:    4 SLWTCLILLSLASASFAANPRTPIDVPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQP 186          

HSP 2 Score: 30.0314 bits (66), Expect = 4.028e-51
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +Y+S+WNADDW
Sbjct:  182 PFNQPMKIYNSLWNADDW 199          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.163e-50
Identity = 95/182 (52.20%), Postives = 126/182 (69.23%), Query Frame = 3
Query:  132 LIFSL-FVGLLMVGLVSSAK------FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            L+FS+  + L ++GL    +      F   Y+ SWA +H++Y   G T+ L LD  SGAGF SK  YLFG  S+++KLVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H+YS+LWN  Q+V  VD+ PIR   N +  G+ FP +QP
Sbjct:    6 LLFSIVLINLSLLGLCGYPRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQP 187          

HSP 2 Score: 29.261 bits (64), Expect = 1.163e-50
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +YSS+W+ADDW
Sbjct:  183 PFNQPMKIYSSLWDADDW 200          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.575e-50
Identity = 87/156 (55.77%), Postives = 114/156 (73.08%), Query Frame = 3
Query:  189 FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            FD  Y  +WA +H+ Y   G  ++L+LD  +G GF ++  YLFG  S+ IKLVGGDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK++H+YS+LWN   + F VD+TPIRV  N +  G+ +P DQP
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQP 187          

HSP 2 Score: 30.0314 bits (66), Expect = 2.575e-50
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +YSS+WNADDW
Sbjct:  183 PFDQPMKLYSSLWNADDW 200          
The following BLAST results are available for this feature:
BLAST of FC869162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH9_ARATH7.328e-7873.48Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH16_ARATH1.416e-5450.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN4.446e-5358.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN4.448e-5350.85Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH5_ARATH9.848e-5357.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH4.833e-5250.84Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN6.298e-5252.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN4.028e-5151.37Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC1.163e-5052.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT2.575e-5055.77Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31009B10EF AbioticL1 Citrus clementina cDNA clone C31009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869162 ID=FC869162; Name=FC869162; organism=Citrus clementina; type=EST; length=689bp
CTCGCCGGGGACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCC
ACTTCACTGGGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTT
CTGTCTTCATTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTG
TGGGTCTTTTAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTT
TATCAAACAAGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCT
CAAGCTTAACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCA
AGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGAC
TCTGCTGGAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCA
CAACGAGTTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACT
TAGTCCAAACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGA
CTTGACCTCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCT
TTGGAACCAGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAG
TGCACACTAACTTGGAGCACAAAGGAATTCCCTTCCCAAAGGACCAGCCA
TGGGTGTGTACAGTTCAATATGGAATGCTGATGACTGGG
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