FC869163
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 1.739e-80 Identity = 146/194 (75.26%), Postives = 161/194 (82.99%), Query Frame = 3 Query: 102 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 683 +GV EMLG PLN + R+SAP AS+PSTFK VALF ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGL Sbjct: 4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGL 194
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25 Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 3 Query: 282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 680 ++YGPDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHA WA+LGA G + PE +++ E VWFK GA + LNY G I +++ + ++VL+G AE YR G Sbjct: 32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR ++L E P YLTGE PGDYG+D GLS P++F+K + E+IH WAMLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G Sbjct: 58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24 Identity = 63/135 (46.67%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 179
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24 Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 3 Query: 282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 680 +WYGPDR +L + P YLTGE PGDYG+D GLS P+ F KY+ E+IHA WA+LGA G + PE + + E VWFK GA + L+Y G I N+V + ++VL+G E YR+ G Sbjct: 38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGG 170
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24 Identity = 62/135 (45.93%), Postives = 81/135 (60.00%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGG 179
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++L+G E YR+ G Sbjct: 62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGG 192
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G Sbjct: 52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 182
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH WAMLGA G + PE F + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G Sbjct: 50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G Sbjct: 53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 183 The following BLAST results are available for this feature:
BLAST of FC869163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869163 ID=FC869163; Name=FC869163; organism=Citrus clementina; type=EST; length=705bpback to top |