FC869180

Overview
NameFC869180
Unique NameFC869180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 64/182 (35.16%), Postives = 97/182 (53.30%), Query Frame = 2
Query:   71 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT----YEGHPEFIRL 604
            VL L  +  ED E + P+  L   G  V  A                S    T +   G++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K  +I AG  W++ E     VVDGN ++       Y    EF++L
Sbjct:    3 VLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEV----VVDGNWVSSRVPADLYAWMREFVKL 164          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 2
Query:   71 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFIRL 604
            VL+L  D  ED E + P+  L   G  V  A    K G +  T  H            G+   ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  IL +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++    G  Y    EF++L
Sbjct:    3 VLILSADQFEDVELIYPYHRLKEEGHEVLVA--SFKRGVI--TGKH------------GYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEV----VVDGNWVSSRVPGDLYAWMREFVKL 164          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 63/182 (34.62%), Postives = 96/182 (52.75%), Query Frame = 2
Query:   71 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFIRL 604
            +L L  +  ED E + P+  L   G  V  A                S      +   G++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  IL +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDGN ++    G  Y    EF++L
Sbjct:    3 ILFLSANEFEDVELIYPYHRLKEEGHEVYIA----------------SFEKGVITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWIDREV----VVDGNWVSSRHPGDLYAWMREFVKL 164          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 65/184 (35.33%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   71 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFIRL 604
            VL+L  D  ED E + P   +   G  V  A    GK +G                    G+   ++  FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG  IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDGN ++    G  Y    EF++L
Sbjct:    3 VLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGK------------------HGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAEV----VVDGNWVSSRHPGDLYAWMREFVKL 164          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: Y1281_ARCFU (Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus GN=AF_1281 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   71 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLK 613
            VL+L  +  ED E   P   L   G+ V  A                S+  +     +G+    + T++++    Y GLVIPGG++PE + +N+  +++V+ F   GK +A+ICHG  +L +A  VKGR+ T++  ++  LIAAGA + +       VVDGN+IT    +  P F    +K
Sbjct:    3 VLILAENEFEDLELFYPLYRLREEGLEVKVA----------------SSSLEVRVGKKGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVITSRMPDDLPYFCGELIK 163          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: YHBO_ECOLI (Protein yhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 42/118 (35.59%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  260 LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLK 613
            ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA  P+   +  AGA + + E +   V    ++T  T +  P F R  L+
Sbjct:   54 IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV---VDKDQLVTSRTPDDLPAFNREALR 168          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: YRAA_BACSU (Putative cysteine protease yraA OS=Bacillus subtilis GN=yraA PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 49/179 (27.37%), Postives = 82/179 (45.81%), Query Frame = 2
Query:   65 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 601
            + + +L  D  ED E   P +A    G SV               A+    G +   +  G    ++    ++D + +D L+IPGG +P+ L  +D   +  + F  + K + +ICHG  +L   D++KG+  T Y  ++  LI AGA++ + E     VV  NI+T  T +    F R
Sbjct:    3 KKIAVLVTDQFEDIEYTSPVKAYEEAGYSV--------------VAIDLEAGKEVTGK-HGEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRSIRKDLINAGANYKDAEV----VVSHNIVTSRTPDDLEAFNR 162          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: Y967_METJA (Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii GN=MJ0967 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 51/150 (34.00%), Postives = 81/150 (54.00%), Query Frame = 2
Query:  194 PTAVHQSTGHQT--YSETRG-------HNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 607
            P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  + EYL  N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + +       VVDGN+IT  +    P++ RLF
Sbjct:   51 PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYED----RGVVVDGNVITAKS----PDYARLF 192          
BLAST of FC869180 vs. ExPASy Swiss-Prot
Match: GS18_BACSU (General stress protein 18 OS=Bacillus subtilis GN=yfkM PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 46/181 (25.41%), Postives = 81/181 (44.75%), Query Frame = 2
Query:   59 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 601
            GK+  ++L   Y ED E   P +A    G  +              T + +  G     +       ++A+ D+++ + +D L+IPGG +P+ L  +D  +   + F    K + +ICHG  +L  A  + GRK T Y  ++  +  AGA  ++ E +   V    ++T  T +  P F R
Sbjct:    2 GKKIAVVLTY-YFEDSEYTEPAKAFKEAGHEL--------------TVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQLVTSRTPDDIPAFNR 164          
The following BLAST results are available for this feature:
BLAST of FC869180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PFPI_PYRHO5.186e-2435.16Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRAB1.155e-2335.71Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRFU9.780e-2334.62Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
PFPI_PYRKO1.412e-2135.33Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
Y1281_ARCFU3.256e-1831.49Uncharacterized protein AF_1281 OS=Archaeoglobus f... [more]
YHBO_ECOLI8.866e-1635.59Protein yhbO OS=Escherichia coli (strain K12) GN=y... [more]
YRAA_BACSU7.025e-1327.37Putative cysteine protease yraA OS=Bacillus subtil... [more]
Y967_METJA7.025e-1334.00Uncharacterized protein MJ0967 OS=Methanocaldococc... [more]
GS18_BACSU1.325e-1125.41General stress protein 18 OS=Bacillus subtilis GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31009D06EF AbioticL1 Citrus clementina cDNA clone C31009D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869180 ID=FC869180; Name=FC869180; organism=Citrus clementina; type=EST; length=706bp
AACGACAGAGAGAGTGTCAGGGAGAGTGAATCCTCTGGAAATGGCAAACA
GCAAAGGAGGCAAGAGGAGCGTGCTGCTACTATGCGGCGATTACATGGAA
GACTACGAGGCGATGGTGCCTTTTCAAGCATTACTGGCTTTCGGAGTCTC
AGTTGACGCCGCGTGTCCCGGAAAGAAATCCGGTGATGTTTGCCCCACTG
CAGTTCATCAATCGACTGGTCATCAGACATATTCCGAGACACGTGGTCAC
AATTTCGCACTCAATGCGACATTTGATGAAATTGACCCGACCAAATATGA
TGGCTTGGTCATACCAGGAGGAAGAGCTCCAGAATATCTTGCTATGAATG
ATTCTGTGATTGACTTAGTGAGAAAATTCTCCAACTCGGGCAAAACAATT
GCTTCCATTTGCCATGGGCAGTTAATATTGGCAGCTGCTGATGTGGTCAA
AGGTCGAAAGTGCACAGCATATCCTCCTGTGAAACCTGTGCTTATTGCCG
CTGGTGCTTCTTGGATTGAGCCAGAGACCATGGCAGCTTGTGTTGTTGAT
GGTAACATCATTACTGGGGCTACCTACGAGGGTCATCCTGAGTTCATTCG
GCTTTTTCTTAAGCACTGGGTGGCACCATAACTGGTTCTGATAAGAGAAT
TCTTTTTCTTTGTGGGGATACATGGAAGATATGAGGTAGCTGTTCTTTTC
AGTCCC
back to top