FC869193

Overview
NameFC869193
Unique NameFC869193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14150 contig Ccv1_Contig14150:10..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.513e-100
Identity = 178/211 (84.36%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+PS +E+   GR++MRKTA+K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAM 223
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 1.976e-100
Identity = 177/211 (83.89%), Postives = 190/211 (90.05%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+PS +E+   G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.581e-100
Identity = 177/211 (83.89%), Postives = 190/211 (90.05%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+PS +E+   G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 222
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 9.807e-100
Identity = 175/207 (84.54%), Postives = 187/207 (90.34%), Query Frame = 3 
Query:   87 GKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            G+AV L+P+  E+    + +MRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAM 211
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.281e-99
Identity = 173/209 (82.78%), Postives = 186/209 (89.00%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F G+AV L+PS  E+   GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 221
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.673e-99
Identity = 174/209 (83.25%), Postives = 185/209 (88.52%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F G+AV L+PS +E+   GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 221
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.185e-99
Identity = 174/211 (82.46%), Postives = 190/211 (90.05%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+PS +E+   G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPE      V++ +  RLAM
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAM 223
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.727e-99
Identity = 175/211 (82.94%), Postives = 187/211 (88.63%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F G AV L+PS +E+   G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   13 FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAM 223
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.867e-99
Identity = 175/211 (82.94%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+PS +E+   G+++MRKTA+K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 222
[Close]
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.155e-98
Identity = 174/211 (82.46%), Postives = 186/211 (88.15%), Query Frame = 3 
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV  +PS +E+   G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   13 FAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAM 223
The following BLAST results are available for this feature:
BLAST of FC869193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2G_SOLLC1.513e-10084.36Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC1.976e-10083.89Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC2.581e-10083.89Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_CUCSA9.807e-10084.54Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_TOBAC1.281e-9982.78Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC1.673e-9983.25Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC2.185e-9982.46Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB27_TOBAC3.727e-9982.94Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_NICPL4.867e-9982.94Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB25_PETSP3.155e-9882.46Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC31009E07EF AbioticL1 Citrus clementina cDNA clone C31009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869193 ID=FC869193; Name=FC869193; organism=Citrus clementina; type=EST; length=704bp
CAGCTGCTCTTGTCTGCACAACTTCGGCTTCTGAATTAAATTCCGCAATG
GCCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAA
CCTTGCCCCTTCAGGCAATGAGCTGGGCAATGGTGGCCGCATCTCCATGC
GTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTT
GACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGCGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCAGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATC
CACGCCCAGAGCATCTTGGCCATCTGAGCTTGCCAGGTGGTATTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGCTTTTGCTGAGCTCAAGTGTAAGGAATCAAGAATGGAGGTTGGC
TATG
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