FC869210

Overview
NameFC869210
Unique NameFC869210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10997 contig Ccv1_Contig10997:170..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 65/176 (36.93%), Postives = 93/176 (52.84%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG +SD YGRR  +    + T   G+LSAFAP Y                     + + EF+P  +R K +++   FW  G+V E  LA  VMP L WRWLL L
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLIL 243          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL L
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLIL 243          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL L
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLIL 243          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL L
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLIL 243          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 61/181 (33.70%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  145 DHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            D    +T+DEA+  +GFG+FQ      +G+ W ++AME+M+LS + PA+  EWG        +TT VF+GM++ +  WG I D +GRR  +    LV  + G++S  +P++                     + + EF+P + R K +V+  +FW  G+V EA LA+ VM    WR L+ L
Sbjct:   62 DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFL 242          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 65/176 (36.93%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL L
Sbjct:   68 FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLL 243          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27
Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +      T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL L
Sbjct:   68 FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLL 243          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 51/176 (28.98%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            +T+++A+  +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR   +L   L      LL++F+P+Y                         EF+P   RG  + +   FW  GS+   ++A +V+P + WRWL+ +
Sbjct:   32 FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRI 207          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLL 681
            +T+++A+  +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR   +L   L      LL++FAP+Y                         EF+P   RG  + +   FW  GS+    LA +++P + WRWL+
Sbjct:   32 FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLI 205          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 52/174 (29.89%), Postives = 80/174 (45.98%), Query Frame = 1
Query:  160 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLL 681
            YT++EA+  +GFG F  L     G     EAME+M+L+ V P ++ EW         ++T+VF G +V     G I+D YGR   + GG +       L++F+ +Y                    F    EF+P   R   + + S FW  GS+    L   V+P + WRW++
Sbjct:   49 YTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMI 222          
The following BLAST results are available for this feature:
BLAST of FC869210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SVOP_XENLA2.526e-2836.93Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_PONAB4.309e-2837.50Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN4.309e-2837.50Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN4.309e-2837.50Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
YOU1_CAEEL5.628e-2833.70Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_MOUSE1.638e-2736.93Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_RAT4.765e-2736.36Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOPL_MOUSE1.815e-1828.98Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]
SVOPL_HUMAN1.815e-1829.89Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
SVOPL_DANRE2.370e-1829.89Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]

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Properties
Property NameValue
Genbank descriptionC31009F12EF AbioticL1 Citrus clementina cDNA clone C31009F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869210 ID=FC869210; Name=FC869210; organism=Citrus clementina; type=EST; length=689bp
AGGGAGCCTCCTTCTTTAGAATTTATGTATTTCATATGATTTTCTGCTGT
ATAGCTTTAAGAATTGAGCTAGGACGTGCCCGTGACTCTGTGAAGGCAAT
AATTTCAAATTAATCTGCATGATACTTGCTATTCAAAGATGGATGATCAT
AGACTTGTGTACACGCTGGATGAAGCACTTACATTCATGGGGTTTGGGAA
GTTCCAAGGTCTCGCGCTTGCTTATTCTGGGCTCGGTTGGTTTTCAGAAG
CAATGGAGGTTATGATTCTCTCCTTTGTGGGACCTGCAGTGAAGTCTGAG
TGGGGATTGTCCTCAAGTGAAGAGAGCCTTATAACAACTGTTGTTTTTGC
TGGAATGTTAGTTGGCGCATATTCATGGGGCCTTATATCTGACATATATG
GAAGAAGGATGAGTATCCTTGGTGGAGCTTTAGTGACTTTTGTAGCTGGG
TTATTAAGTGCTTTTGCCCCTAACTACATATCATTGTTGATTCTTCGTGG
TTTGGCTGGTGCTGGCCTGGGCAGTGGGCATGTCTTCTTCTCCTGGTTTA
TGGAATTTGTTCCTCCTTCAAATCGAGGAAAGTGGATGGTCGTCTTTTCA
ACTTTCTGGACATTTGGGTCGGTTTCTGAGGCTGCACTTGCTTGGATCGT
CATGCCAATATTGACTTGGAGGTGGCTACTTGCTTTGTC
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