FC869215

Overview
NameFC869215
Unique NameFC869215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9480 contig Ccv1_Contig9480:1..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.350e-33
Identity = 79/187 (42.25%), Postives = 112/187 (59.89%), Query Frame = 3
Query:   93 SQCFENPPKLSPGSG--CGAGTVQQ--LGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            SQC +NPP  S        AG V     GGL  YV+G+    S  A++L SDVFGYEAPL R++ DKVA AG+ VV PDF  GD + D  N       W + H+  K   DAK + AALK +G S +   G+CWGG ++ ++  + D++A  + HP ++T DD+ E+K P+ ILGA+ D  +PP+++
Sbjct:   27 SQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAA--SSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGDYLDDKKN----FTEWLEAHSPVKAAEDAKPLFAALKKEGKS-VAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEV 206          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  141 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            G G   Q+  +  YVT S P D+  A++++ D+FG++ P  R +AD +A  G+  + PDFF G    D         AW K  N  K   +  +V+  L+ +     IG  GFCWGGVV  ++ +++ DI+A V ++      +D+  +K P   + AE D V P E +
Sbjct:   20 GMGHEVQVEHIKAYVTRS-PVDAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQV 187          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  141 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            G G   Q+  +  YVT S P D+  A+++I D+FG++ P  R +AD ++G G+  + PDFF G    D +        W K  N  K   +  +++  LK +     IG  GFCWGG+    L   + + +A V ++      +DI  +K P   + AE D V P +D+
Sbjct:   20 GLGREVQVEHIKAYVTKS-PVDAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDV 187          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 3
Query:   81 NMSGSQCFENPPKLSPGSGCGAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTD--KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHD--IQAAVVLHPGAITVDDINEI--KVPVAILGAEIDHVSP 629
            N  G  CFE         G   G  +++ GL+TY  GS  P  K  I++++DV+G +       ADK A AG++V  PD  +GD I   ++   DR+AW + H+ +  K  VD    +  L+      IG  G+C+G   A +  S       AA + HP  +++++I  I  K P+ I  AE DH+ P
Sbjct:    4 NQPGKCCFEGVCH----DGTPKGRREEIFGLDTYAAGSTSPKEK-VIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAI--SSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLE-YDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFP 184          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  141 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            G G   Q+  +  YVT S P D+  A+++I D+FG++ P  R +AD ++G G+  + PDFF G    D +        W K  N  K   +  +++  LK +     IG  GFCWGG     L   + + +A V ++      +DI  +K P   + AE D V P +D+
Sbjct:   20 GLGREVQVEHIKAYVTKS-PVDAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDV 187          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.341e-16
Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  141 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            G G   Q+  +  YVT S P D+  A++++ D+FG++    R +AD +AG G+  + PDFF G    D          W K  N  K   +  +V+  LK +     IG  GFCWGG+V   + +++ +++A V ++      +D+  +K P   + AE D V P E +
Sbjct:   20 GMGQEVQVEHIKAYVTRS-PVDAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQV 187          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 49/167 (29.34%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  147 GTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            G   Q+  +  YV+       K A++++ D+FG++ P  R +AD +   G++ + PDFF G      +N +     W +     K   +   V+  LK +  V  IG  GFCWGGVV   L   + +++A V  +     V+D   +  P   + AE+DHV P E +
Sbjct:   22 GQEVQIEHIKAYVSKPHSSTDK-AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQV 187          
BLAST of FC869215 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 3
Query:  159 QLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDL 641
            Q+  +  YV+       K A++++ D+FG++ P  R +AD +   G++ + PDFF G      +N       W +     K   +   V+  LK +  V  IG  GFCWGGVV   L   + +++A V  +     V+D   +  P   + AEIDHV P E +
Sbjct:   26 QIEHIKAYVSKPHSSTDK-AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQV 187          
The following BLAST results are available for this feature:
BLAST of FC869215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E134_MAIZE1.350e-3342.25Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_MOUSE2.314e-1732.54Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_PONAB1.148e-1631.36Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
AIM2_YEAST1.148e-1632.28Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
CMBL_HUMAN2.558e-1631.36Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
CMBL_RAT3.341e-1630.77Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
CMBL_XENTR9.099e-1429.34Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA9.099e-1430.06Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31009G05EF AbioticL1 Citrus clementina cDNA clone C31009G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869215 ID=FC869215; Name=FC869215; organism=Citrus clementina; type=EST; length=646bp
CACTCTCCAGAGCATAATCAGATTCCCTCCATTTCTTCCGAAGGTAATAC
AGTTAACCTCCATTATCGAATTTGGGTTTGAATATGTCAGGCTCACAGTG
CTTTGAGAACCCACCAAAGCTGAGCCCGGGTTCGGGTTGTGGAGCTGGGA
CTGTACAGCAACTCGGTGGCCTCAACACTTATGTGACCGGGTCTGGTCCT
CCAGATTCCAAGTCTGCTATTCTTCTCATTTCTGACGTTTTTGGGTATGA
AGCTCCTCTTTTCAGGAAACTTGCCGACAAAGTTGCCGGTGCTGGATTCT
TAGTTGTGGCTCCTGATTTCTTTTATGGCGACCCTATTGTTGATCTGAAC
AACCCTCAGTTTGATCGAGAGGCCTGGAGAAAAATTCATAACACGGACAA
AGGTTATGTAGATGCCAAATCAGTAATTGCTGCTTTGAAAAGTAAAGGTG
TATCTGCCATAGGGGCAGCAGGTTTTTGCTGGGGAGGCGTTGTAGCTGCA
AAATTGGCAAGTTCTCATGATATTCAGGCTGCAGTTGTGTTGCATCCTGG
TGCCATCACAGTCGATGATATAAATGAGATTAAAGTTCCAGTTGCTATTT
TGGGAGCTGAGATTGATCACGTTTCCCCACCAGAAGATCTGAAACG
back to top