FC869230

Overview
NameFC869230
Unique NameFC869230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10221 contig Ccv1_Contig10221:67..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2)

HSP 1 Score: 377.096 bits (967), Expect = 4.817e-104
Identity = 184/219 (84.02%), Postives = 197/219 (89.95%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTR 661
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKL+EIF TG+V GSY+AMMTVIFFW +YKTDFFPR FGVATLEKTAHDDFRKLASAIYLQVS ISQALIFVTRSRSWSFVERPGI L++AF++AQL+ATLIAVYANWSF               LYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQR+AFTRQKDFGKEQRELQWAHAQRTLHGLQ PDT+
Sbjct:  685 LIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWVSYKTDFFPRTFGVATLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGIFLMIAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTK 903          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.187e-102
Identity = 182/222 (81.98%), Postives = 197/222 (88.74%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTRCSP 670
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKL+EIF TG+V GSY+AMMTVIFFWAAYKTDFFPR FGV+TLEKTAHDDFRKLASAIYLQVS ISQALIFVTRSRSWS+VERPG+LL+VAF++AQL+ATLIAVYANWSF               LYNI+FYIPLD IKF IRYALSGRAWDLVIEQR+AFTRQKDFGKEQRELQWAHAQRTLHGLQ PD +  P
Sbjct:  681 LIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWAAYKTDFFPRTFGVSTLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSYVERPGMLLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDIIKFLIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFP 902          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.923e-101
Identity = 182/219 (83.11%), Postives = 196/219 (89.50%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTR 661
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLG YLAMMTVIFFWAAYKT+FFP VFGV+TLEKTA DDFRKLASAIYLQVS ISQALIFVTRSRSWSFVERPG LL++AF+IAQL+ATLIAVYANWSF               +YN++FYIPLD IKFFIRYALSGRAWDLV E+RIAFTR+KDFGKEQRELQWAHAQRTLHGLQ PDT+
Sbjct:  682 LIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGGYLAMMTVIFFWAAYKTNFFPHVFGVSTLEKTATDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGFLLVIAFVIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWIYNLVFYIPLDIIKFFIRYALSGRAWDLVFERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTK 900          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.111e-100
Identity = 182/219 (83.11%), Postives = 195/219 (89.04%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTR 661
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKLAEIFTTG+VLG YLAMMTVIFFWAAYKT+FFPRVFGV+TLEKTA DDFRKLASAIYLQVSTISQALIFVTRSRSWSF+ERPG+LL+VAF IAQL+ATLIAVYANWSF               LYNI+FYIPLD   F IRYALSG+AWDLVIEQRIAFTR+KDFGKEQRELQWAHAQRTLHGLQ PD +
Sbjct:  681 LIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFMERPGLLLVVAFFIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDLXXFLIRYALSGKAWDLVIEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPK 899          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.604e-99
Identity = 179/219 (81.74%), Postives = 194/219 (88.58%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTR 661
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKLAEIFTTG+VLG YLAMMTVIFFWAAYKT+FFPR+FGV+TLEKTA DDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPG+LL+ AF +AQL+ATLIAVYANWSF               LYNI+ YIPLD IKF IRYALSG+AWDLV+EQRIAFTR+KDFGKE RELQWAHAQRTLHGLQ PD +
Sbjct:  681 LIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRIFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVTYIPLDLIKFLIRYALSGKAWDLVLEQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPK 899          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA2_SOLLC (Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 2.736e-99
Identity = 177/219 (80.82%), Postives = 195/219 (89.04%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTR 661
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKLAEIFTTG+VLG YLAMMTVIFFWAAY+T FFPRVFGV+TL++TA DDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPG+LL+VA ++AQL+ATLIAVYA+WSF               LYN++FY PLD IKF IRYALSGRAWDLV+EQRIAFTR+KDFGKEQRELQWAHAQRTLHGLQ PD +
Sbjct:  429 LIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETQFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVALIVAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIK 647          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.572e-81
Identity = 145/217 (66.82%), Postives = 174/217 (80.18%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKL EIF TGIVLGSYLA+MTVIFFWA +KTDFF   FGV ++  + H+    + SA+YLQVS +SQALIFVTRSRSWSF+ERPG+LL+ AF++AQL+AT +AVYANW F               LY+I+FY PLD  KFFIR+ LSGRAWD ++E +IAFT +KD+G+E+RE QWA AQRTLHGLQPP+
Sbjct:  677 LIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMHKTDFFTDKFGVRSIRNSEHE----MMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKKDYGREEREAQWATAQRTLHGLQPPE 889          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 5.364e-79
Identity = 145/218 (66.51%), Postives = 170/218 (77.98%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDT 658
            +I+AIL+DGTIMTISKDRVKPSPLPDSWKL EIF TG+VLG+YLA+MTV+FFWAA  TDFF   FGV ++    H+    L +A+YLQVS +SQALIFVTRSRSWS+VERPG  L+ AF +AQLIATLIAVYANW+F               LY+I+FYIPLD +KF IRY+LSGRAWD VIE + AFT +KD+GK +RE QWA AQRTLHGLQP  T
Sbjct:  682 LIVAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLAVMTVVFFWAAESTDFFSAKFGVRSISGNPHE----LTAAVYLQVSIVSQALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQT 895          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.321e-77
Identity = 141/217 (64.98%), Postives = 173/217 (79.72%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDRVKPSP+PDSWKL EIF TG+VLG Y A+MTV+FFWA + TDFF   FGV +L  +  +    + SA+YLQVS ISQALIFVTRSRSWSF+ERPG+LL++AF+IAQL+ATLIAVYANW+F               LY+IIFY+PLD +KF IRY LSG+AW+ +++ + AFT +KD+GKE+RE QWA AQRTLHGLQPP+
Sbjct:  680 LIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGGYQALMTVVFFWAMHDTDFFSDKFGVKSLRNSDEE----MMSALYLQVSIISQALIFVTRSRSWSFLERPGMLLVIAFMIAQLVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPE 892          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.020e-77
Identity = 141/217 (64.98%), Postives = 171/217 (78.80%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDRVKPSP+PDSWKL EIF TG+VLG+Y+A+ TV+FFW A+ TDFF + FGV +++    +    L +A+YLQVS ISQALIFVTRSRSWSFVERPG LLL+AF+IAQL+ATLIAVYANW F               +Y+II YIPLD +KF IRYAL+G+AWD +I Q+ AFT +KD+GK +RE QWA AQRTLHGL PP+
Sbjct:  680 LIIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMALTTVLFFWLAHDTDFFSKTFGVRSIQGNEEE----LMAALYLQVSIISQALIFVTRSRSWSFVERPGFLLLIAFVIAQLVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE 892          
The following BLAST results are available for this feature:
BLAST of FC869230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PMA4_ARATH4.817e-10484.02ATPase 4, plasma membrane-type OS=Arabidopsis thal... [more]
PMA11_ARATH1.187e-10281.98ATPase 11, plasma membrane-type OS=Arabidopsis tha... [more]
PMA1_NICPL2.923e-10183.11Plasma membrane ATPase 1 OS=Nicotiana plumbaginifo... [more]
PMA3_NICPL1.111e-10083.11Plasma membrane ATPase 3 OS=Nicotiana plumbaginifo... [more]
PMA1_SOLLC1.604e-9981.74Plasma membrane ATPase 1 OS=Solanum lycopersicum G... [more]
PMA2_SOLLC2.736e-9980.82Plasma membrane ATPase 2 (Fragment) OS=Solanum lyc... [more]
PMA1_ORYSJ2.572e-8166.82Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA9_ARATH5.364e-7966.51ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA4_NICPL1.321e-7764.98Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA8_ARATH5.020e-7764.98ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC31009H11EF AbioticL1 Citrus clementina cDNA clone C31009H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869230 ID=FC869230; Name=FC869230; organism=Citrus clementina; type=EST; length=689bp
GGAGATTATCATTGCCATCCTGCATGATGGTACAATTATGACAATATCAA
AAGATAGGGTGAAACCGTCTCCTCTGCCAGATAGCTGGAAGCTTGCTGAA
ATTTTTACAACTGGCATTGTTCTTGGCAGTTACTTGGCAATGATGACAGT
TATTTTCTTCTGGGCAGCATATAAAACAGATTTCTTTCCGAGAGTATTTG
GGGTGGCAACCCTTGAGAAAACAGCTCATGATGACTTCCGAAAGCTTGCC
TCAGCAATTTACTTGCAAGTGAGCACTATCAGTCAGGCCCTTATATTCGT
AACACGGTCAAGAAGTTGGTCTTTCGTTGAGCGACCTGGTATATTGCTGC
TTGTGGCTTTTCTGATTGCTCAACTGATTGCTACTCTGATTGCCGTTTAT
GCAAACTGGAGTTTTGCTGCAATTGAAGGGATTGGGTGGGGTTGGGCCGG
TGTGGTCTGGCTTTACAACATCATCTTCTACATCCCACTTGATTTCATTA
AGTTCTTCATACGCTATGCTCTGAGTGGGAGGGCCTGGGATCTTGTTATC
GAGCAGAGGATTGCTTTCACAAGGCAAAAGGATTTTGGTAAGGAACAACG
TGAGCTTCAATGGGCACATGCACAAAGAACATTGCATGGGTTGCAACCAC
CTGATACAAGATGTTCACCGAGCGAACTCATGAACTTAT
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