FC869245

Overview
NameFC869245
Unique NameFC869245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869245 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.274e-84
Identity = 144/187 (77.01%), Postives = 165/187 (88.24%), Query Frame = 2
Query:  179 TTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS 739
            TTASLPWLTGTAVNPLFRAAYL+KDGER VTLVIPWLSL  Q  VYP NITFASP E E Y+R WLE+R GFTS F  +FYPGKF+ DK+SILAVGDI+E+IPD+EADIAVLEEPEHLTWFHHGKRWK KFR V+GI+HTNYLEYVKREKN ++QAFLL+++N+W+  ++CHKVIRLSAATQ+Y  S
Sbjct:   11 TTASLPWLTGTAVNPLFRAAYLSKDGERDVTLVIPWLSLKDQALVYPNNITFASPSEHEKYIRQWLEERVGFTSGFSIKFYPGKFSRDKRSILAVGDISEVIPDKEADIAVLEEPEHLTWFHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGQMQAFLLKYLNNWVVGIYCHKVIRLSAATQDYSGS 197          
BLAST of FC869245 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.838e-84
Identity = 143/187 (76.47%), Postives = 164/187 (87.70%), Query Frame = 2
Query:  179 TTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS 739
            TTAS+PWLTGTAVNPLFRAAYLA DGERRVTLVIPWL+L HQK VYP +ITF+SP EQEAYVR WLE+R  F   F+ RFYPGKFA DK+SIL VGDI++ IPDEEADIAVLEEPEHLTWFHHG++WK KF +V+GIVHTNYLEYVKREK  R++AF L+++NSW+  ++CHKVIRLSAATQEYP S
Sbjct:   13 TTASIPWLTGTAVNPLFRAAYLANDGERRVTLVIPWLTLKHQKLVYPNSITFSSPSEQEAYVRQWLEERVSFRLAFEIRFYPGKFAIDKRSILPVGDISDAIPDEEADIAVLEEPEHLTWFHHGQKWKTKFNYVIGIVHTNYLEYVKREKQGRVKAFFLKYLNSWVVGIYCHKVIRLSAATQEYPKS 199          
BLAST of FC869245 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.469e-82
Identity = 142/187 (75.94%), Postives = 162/187 (86.63%), Query Frame = 2
Query:  179 TTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS 739
            TTASLPWLTGTAVNPLFRAAYLAK GER VTLVIPWLSL  Q+ VYP NITFASP E E Y+  WLE+R GFTS F  +FYPGKF+ DK+SILAVGDI+EIIPD+ ADIAVLEEPEHLTW+HHGKRWK KFR V+GI+HTNYLEYVKREKN  +QAFLL+++N+W+  ++CHKVIRLSAATQ+Y  S
Sbjct:   11 TTASLPWLTGTAVNPLFRAAYLAKSGERDVTLVIPWLSLKDQRLVYPNNITFASPSEHEKYICQWLEERVGFTSGFSIQFYPGKFSRDKRSILAVGDISEIIPDKVADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGVMQAFLLKYLNNWVVSIYCHKVIRLSAATQDYTGS 197          
BLAST of FC869245 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.251e-72
Identity = 119/188 (63.30%), Postives = 152/188 (80.85%), Query Frame = 2
Query:  176 ITTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS 739
            +TTASLPW+TGTAVNPLFRAAYL++  +++VTL++PWL    Q+ VYP N+TF SP+EQEAY+R WLE+R GF + F   FYPGKF+  ++SI+  GD ++ IP  +ADIA+LEEPEHL W+HHGKRW  KF  VVGIVHTNYLEY+KREKN  LQAFL++ +N+W+ R +CHKV+RLSAATQ+ P S
Sbjct:  316 VTTASLPWMTGTAVNPLFRAAYLSQSAKQKVTLLVPWLCKSDQELVYPSNLTFTSPEEQEAYIRSWLEERIGFKADFKISFYPGKFSEARRSIIPAGDTSQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNWVTRAYCHKVLRLSAATQDLPKS 503          
BLAST of FC869245 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.196e-70
Identity = 117/188 (62.23%), Postives = 150/188 (79.79%), Query Frame = 2
Query:  176 ITTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS 739
            +TTASLPW+TGTAVNPLFRAAYL++  +++VTL++PWL    Q+ VYP N+TF SP+EQE Y+R WLE+R GF + F   FYPGKF+  ++SI+  GD  + IP ++ADIA+LEEPEHL W+HHG RW  KF  VVGIVHTNYLEY+KREKN  LQAFL++ +N+W+AR +C KV+RLSAATQ+ P S
Sbjct:  319 VTTASLPWMTGTAVNPLFRAAYLSQSEKQKVTLLVPWLCKSDQELVYPSNLTFTSPEEQEGYIRNWLEERIGFKADFKISFYPGKFSQARRSIIPAGDTAQFIPSKDADIAILEEPEHLNWYHHGTRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNWVARAYCDKVLRLSAATQDLPKS 506          
BLAST of FC869245 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.512e-69
Identity = 118/188 (62.77%), Postives = 149/188 (79.26%), Query Frame = 2
Query:  176 ITTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS 739
            +TTASLPW+TGTAVNPLFRAAYLAK  ++ VTLV+PWL    Q+ VYP N+TF+SP+EQE+Y+R WLE+R GF + F   FYPGKF+ +++SI   GD ++ I  ++ADIA+LEEPEHL W++HGKRW  KF  VVGIVHTNYLEY+KREKN  LQAF +  VN+W+ R +C KV+RLSAATQ+ P S
Sbjct:  349 VTTASLPWMTGTAVNPLFRAAYLAKAAKQSVTLVVPWLCESDQELVYPNNLTFSSPEEQESYIRKWLEERIGFKADFKISFYPGKFSKERRSIFPAGDTSQFISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFFVNHVNNWVTRAYCDKVLRLSAATQDLPKS 536          
The following BLAST results are available for this feature:
BLAST of FC869245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG2_LOTJA1.274e-8477.01Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH2.838e-8476.47Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_SOYBN3.469e-8275.94Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG1_SOYBN4.251e-7263.30Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA5.196e-7062.23Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_ARATH1.512e-6962.77Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31010B04EF AbioticL1 Citrus clementina cDNA clone C31010B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869245 ID=FC869245; Name=FC869245; organism=Citrus clementina; type=EST; length=744bp
GCCGGGGGTACACAAGCGTTTAACAAACCTTTCCCACATTTTCTTCAAGC
TTCTTAAACCGACGCTTTGACGCAGCTGTTGAGTTCTCGTCACAGTCTTC
TTATCCGAAAGGATTTCTCCACAAAAATCCAGAGATATTGTCGCTGATGG
ATAGGAAACAGCAGCATATTGCTATATTACAACTGCAAGCCTGCCTTGGT
TGACTGGGACAGCTGTGAATCCTCTGTTCCGTGCTGCCTATCTTGCAAAA
GACGGGGAAAGAAGAGTTACTTTGGTGATTCCTTGGTTATCTTTGATACA
TCAAAAACAAGTATATCCCGGAAACATCACCTTTGCTTCACCTAAAGAAC
AGGAAGCATATGTTCGTTGGTGGCTTGAGGATAGGACTGGGTTTACATCT
ACTTTTGATACACGTTTCTATCCTGGGAAGTTTGCTGCAGATAAAAAGAG
CATTCTTGCAGTAGGAGACATTACGGAAATCATCCCTGATGAAGAGGCGG
ATATTGCTGTCCTTGAGGAGCCTGAGCATCTTACGTGGTTTCATCACGGC
AAGAGATGGAAAGCTAAATTCCGCTTTGTTGTAGGAATCGTGCACACCAA
TTATCTGGAATATGTCAAAAGGGAGAAGAATGATCGATTACAAGCATTTC
TTCTTGAATTTGTAAATAGCTGGCTTGCTCGTGTCCATTGTCACAAGGTA
ATTAGGCTATCTGCTGCCACACAGGAATATCCCAATTCATCGTC
back to top