FC869252

Overview
NameFC869252
Unique NameFC869252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.254e-48
Identity = 97/207 (46.86%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   16 EIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTESS 636
            ++ ++IV KC GLPLA +TLGG+LR +    +WERVLS++IW+L  ++ +++P LRVSYYYL A LK+CFAYCS+FPK + FE+ +++LLW A GFL +    K  E+LG E F EL SRS  Q++    +R++MHD IN+LA +A+GE  F+ ++      Q   S   R+LSY+ + Y     F  L +++ LRTFLP+ LT SS
Sbjct:  361 DLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFASGE--FSSKFEDGCKLQ--VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSS 560          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.256e-33
Identity = 73/147 (49.66%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASR--FVMHDLINDLA 444
            L EI K+IV KC G+PLAA+TLGGLLR K +  +WE V  ++IW L ++   ++PALR+SY++L   L+QCFAYC++FPKD + E+  +I LW A  FL  K   +  ED+G E++ EL+ RSFFQ+    + +  F MHDLI+DLA
Sbjct:  335 LMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMEL-EDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLA 480          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.064e-32
Identity = 72/147 (48.98%), Postives = 101/147 (68.71%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQ--QSSNDASRFVMHDLINDLA 444
            L  I K+IV KC G+PLAA+TLGGLLR K +  +WE V   +IW L ++   I+PALR+SY++L   L+QCFAYC++FPKD +  +  +I LW A GFL  K   +  ED+G E++ EL+ RSFFQ  ++ +  + F +HDLI+DLA
Sbjct:  337 LVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLEL-EDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLA 482          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.042e-32
Identity = 70/147 (47.62%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASR--FVMHDLINDLA 444
            L  I K+IV KC G+PLAA+TLGG+LR K +  +WE V  + IW L ++   I+PALR+SY++L   L+QCF YC++FPKD +  +  +I  W A GFL  K   +  ED+G E++ EL+ RSFFQ+   ++ +  F MHDLI+DLA
Sbjct:  335 LMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLEL-EDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLA 480          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.620e-31
Identity = 73/147 (49.66%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQ--QSSNDASRFVMHDLINDLA 444
            L  I K+IV K  G+PLAA+TLGG+L  K +   WE V  + IW L ++   I+PALR+SY+ L   LKQCFAYC++FPKD + E+ ++I LW A GFL  K   +  ED+G E++KEL+ RSFFQ  +  +  + F MHDLI+DLA
Sbjct:  336 LVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMEL-EDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLA 481          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 71/202 (35.15%), Postives = 102/202 (50.50%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLP 615
            LE I K+I  +C GLPLAA+ +   LR K +  DW  V              I+P L++SY  L   LK+CFA CS+FPK + F+  E++LLW A   L +    +  ED+G +   +L ++SFFQ+     + FVMHDL+NDLA   +G+  F +    E +         RH S+          F  +   + LRT LP
Sbjct:  355 LEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKN----FSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRL----EDDNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILP 548          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: DRL37_ARATH (Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    4 NLLEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIW---ELQEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGE 462
            N + +I KKIVAKC GLPLA + +   +  K     W R L T      E++     I   L++SY YL     +CF YC+LFPK Y  ++ E++  W   GF+D K+  +  +D G EI   L       +S+    +  MHD+I D+A W   E
Sbjct:  332 NEISDIAKKIVAKCCGLPLALEVIRKTMASKSTVIQWRRALDTLESYRSEMKGTEKGIFQVLKLSYDYLKTKNAKCFLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESN---KKVYMHDMIRDMALWIVSE 484          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: DRL3_ARATH (Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query:   19 IRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERV---LSTKIWELQEERCDIMPALRVSYYYLS-APLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAA 456
            + +K+  KC GLPLA   +G  +  ++   +W+ V   L++   E       I+P L+ SY  L    +K CF YCSLFP+DYE  + E+I  W   GF+D  E E    + G +I   L  R+         ++  MHD+I ++A W A
Sbjct:  407 LARKVAEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSL-VRAHLLMDGELTTKVKMHDVIREMALWIA 555          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWERVLSTKIWEL--QEERCDIMPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQ----QSSNDASRFVMHDLINDLA 444
            LE I +K+V +C GLPLA  +LG ++  K    +W++V ST  WEL    E   +   + +S+  L  PLK+CF YCSLFP +Y  +   +I +W A  F++   R    E++      EL  R+  Q            F MHD+I ++A
Sbjct:  362 LEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVE-PIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIA 511          
BLAST of FC869252 vs. ExPASy Swiss-Prot
Match: DRL1_ARATH (Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 50/156 (32.05%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   10 LEEIRKKIVAKCDGLPLAAQTLGGLLRGKDDRCDWER---VLSTKIWELQEERCDIMPALRVSYYYLSAP-LKQCFAYCSLFPKDYEFEEGEIILLWCASGFLDRKEREKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEI 465
            + E+ +K+  KC GLPLA   +G  +  K    +W     VLS+   E       I+P L+ SY  L+   +K CF YCSLFP+DY  E+  +I  W   GF+D  E  +     G EI   L       + + +  +  MHD++ ++A W A ++
Sbjct:  337 IPELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSSYAAEFPGME-QILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDL 491          
The following BLAST results are available for this feature:
BLAST of FC869252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
R13L1_ARATH5.254e-4846.86Putative disease resistance RPP13-like protein 1 O... [more]
RGA3_SOLBU1.256e-3349.66Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA4_SOLBU1.064e-3248.98Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA1_SOLBU4.042e-3247.62Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU2.620e-3149.66Disease resistance protein RGA2 OS=Solanum bulboca... [more]
DRL21_ARATH7.383e-2635.15Putative disease resistance protein At3g14460 OS=A... [more]
DRL37_ARATH3.210e-2135.26Probable disease resistance protein At5g47250 OS=A... [more]
DRL3_ARATH8.182e-1733.33Probable disease resistance protein At1g15890 OS=A... [more]
RPM1_ARATH2.380e-1634.44Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
DRL1_ARATH3.109e-1632.05Probable disease resistance protein At1g12280 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31010B11EF AbioticL1 Citrus clementina cDNA clone C31010B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869252 ID=FC869252; Name=FC869252; organism=Citrus clementina; type=EST; length=719bp
GATAACTTATTGGAGGAAATTCGCAAGAAGATAGTGGCCAAATGCGATGG
CTTGCCCTTGGCAGCGCAAACACTTGGAGGACTTTTGCGAGGAAAAGATG
ACAGATGTGATTGGGAGAGAGTGCTCAGTACCAAGATATGGGAATTGCAA
GAAGAGAGATGTGACATTATGCCGGCGCTTAGAGTGAGCTACTATTATCT
TTCGGCACCTTTGAAACAATGCTTTGCGTATTGCTCATTGTTTCCAAAGG
ATTATGAATTTGAAGAGGGGGAGATAATTTTGTTATGGTGTGCCTCGGGC
TTCTTGGATCGCAAAGAGCGTGAGAAAACTGGTGAAGATTTAGGTCTTGA
AATCTTTAAGGAGCTACATTCAAGATCCTTTTTCCAGCAATCAAGCAACG
ATGCATCACGATTTGTGATGCACGATCTTATCAACGACCTTGCGCATTGG
GCTGCAGGGGAAATATACTTCACAATGGAGTATACCTCTGAGGTTAACAA
GCAACAAAGTTTTTCCCGATATCTTCGTCATCTGTCATATATTCCTGAAT
ATTATGTTGGCGGTAAAAGGTTTGGGGACTTGTATGATATCCAACATTTG
AGAACTTTTTTACCAGTAATGTTGACAGAGAGTTCGCCTGGCTACTTGGC
TCCTAGCATTCTTCCTAAAGTTGCTCAACTCCACGCTTGANGGTCTTCTC
TTTGCGTGGATATCACATC
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