FC869255

Overview
NameFC869255
Unique NameFC869255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1029 contig Ccv1_Contig1029:18..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869255 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.821e-54
Identity = 121/232 (52.16%), Postives = 145/232 (62.50%), Query Frame = 2
Query:   26 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNMRHF 712
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG  S  + L+P ILS DSF+FSIP            +C+  CAPE  N   F
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAG-TSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEF 223          

HSP 2 Score: 22.7126 bits (47), Expect = 1.821e-54
Identity = 9/17 (52.94%), Postives = 9/17 (52.94%), Query Frame = 3
Query:  711 FQECTYSDHAHFDAKDY 761
            F  C  S  AHF A DY
Sbjct:  224 FNRCKNSSRAHFVATDY 240          
BLAST of FC869255 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.581e-53
Identity = 119/232 (51.29%), Postives = 144/232 (62.07%), Query Frame = 2
Query:   26 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNMRHF 712
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG  S  + L+P ILS DSF+FSIP            +C+  CAPE  N   F
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAG-TSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEF 223          

HSP 2 Score: 22.7126 bits (47), Expect = 2.581e-53
Identity = 9/17 (52.94%), Postives = 9/17 (52.94%), Query Frame = 3
Query:  711 FQECTYSDHAHFDAKDY 761
            F  C  S  AHF A DY
Sbjct:  224 FNRCKNSSRAHFVATDY 240          
BLAST of FC869255 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 91/186 (48.92%), Postives = 116/186 (62.37%), Query Frame = 2
Query:  164 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNMRHF 712
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + N   F
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEF 225          
BLAST of FC869255 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.476e-31
Identity = 80/200 (40.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  164 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNMRHFSRVYIFRSC 739
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   N R F     FR C
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREF-----FREC 230          
BLAST of FC869255 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 79/188 (42.02%), Postives = 110/188 (58.51%), Query Frame = 2
Query:   89 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP 628
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIP 219          
The following BLAST results are available for this feature:
BLAST of FC869255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.821e-5452.16Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI2.581e-5351.29Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH5.297e-4148.92Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH8.476e-3140.00Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL1.107e-3042.02Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionC31010C02EF AbioticL1 Citrus clementina cDNA clone C31010C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869255 ID=FC869255; Name=FC869255; organism=Citrus clementina; type=EST; length=761bp
GAACACACAAACAATTTAGACTCCAATGACAGCAGTAGCCGATAGCAAGC
CCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAACGGCCTTACTATCAGTT
TTTTCAAGTGGACCTTATTCCCCGAAACTCAAGACAGTGAATAAACCATG
GTTTAATAGTTTTCCTCCAAAGCCGTTGAATATTGTTTATCCAGAAGAAA
AAGGAACATATGAAGTTATTTTGTTTTTCCACGGCACTGCTCTCAGCAAC
ACAAGCTATTCCAATCTCTTAGACCACTTGGCTTCCCATGGATACATCGT
TGTTGCCCCTCAGTTATACGATTTTCTGCCGCCGAAAGGAAACGGAGAAG
TTAACGATGCAGCAAACGTCCTCAACTGGTTATCAACAGGCCTTCAATCA
GAACTCCCGGAAAATGTTGAAGCTAACCTAAACTACGTTGCTCTTATGGG
ACACAGTCGCGGAGGACTAATAGCGTTCGGTCTGGCACTTGGCTATGCAA
CAAATCCTCCAGTTAGCATTAAAATTTCAGCATTAGTAGGCATAGACCCA
GTTGCGGGGTTAGCCAGCGTTCATAGTGAACTTGAACCCCCGATTCTCAG
TCATGACTCATTCGAGTTCTCAATTCCTGTTACTGTAATTGGCACCGGAC
TCGGTGGTGTGACAAAGTGCATGCAGCCTTGTGCACCGGAAAACAAAAAC
ATGAGGCATTTTTCAAGAGTGTACATATTCAGATCATGCTCATTTTGATG
CTAAGGATTAT
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