FC869277

Overview
NameFC869277
Unique NameFC869277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:15..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  383 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSK----HDNKQKRVFFTNKLYLPSXTPDGL 709
            VS+ELD KTG +K+T++ YA  +  D    + YE++F+VPSGFG IGAI+V NE  +EM+L+DI L   DG  N  V  + CNSW+  K         KR+FF NK YLP  TP GL
Sbjct:  119 VSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGL 235          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  383 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDI--VLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            VS+ELDPKTG ++  ++ +A     +G     YE++  VP+ FG +GA+LVENEHH+EM++KDI  +  G  +  +     SW+HSK D+ + R FFT K YLPS TP G+
Sbjct:  106 VSSELDPKTGRERERVKGFAHMTLKEGT----YEAKMSVPASFGPVGAVLVENEHHREMFIKDIKLITGGDESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGI 212          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  383 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            +S +LDPKT L K +    ++D+++K     +  + Y +EF V + FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+FFTN+ YLP+ TP GL
Sbjct:  124 ISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAE-RVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGL 235          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 2
Query:  383 VSAELDPKTGLD----KSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDG--LPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            +S ++ P+T       + +I+D+ +K GA GD ++ Y +EF V + FGE GAI V N H++E +L+ IV++G  LP GPV+  CNSW+ S  +   KRVFF+NK YLPS TP GL
Sbjct:  118 ISTKIHPRTKKPMQSGRVSIKDWCQKRGAKGD-HVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGL 231          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 2
Query:  383 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            +S ++DPKT   K +    ++D+++K  +  +  + Y +EF V S FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+ FTN+ YLPS TP GL
Sbjct:  130 MSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAE-RVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGL 241          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  383 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSKHDNKQ----KRVFFTNKLYLPSXTPDGL 709
            VS+EL+ KTG  K+T+  YA K+  D  G + YE++F+VP+GFG IGA++V NE  +EM+L+D+ L   DG  N  V  + CNSW+  K    +    KR+FF  K YLP  TP GL
Sbjct:  137 VSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGL 252          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  383 VSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            VS E DP+ G  K    S +  +  K     +  + Y +EF V +GFGE GA+ V N H +E Y++ IV++G P GP + TCNSW+     ++ +RVFF+N+ YLPS TP GL
Sbjct:  106 VSTETDPRKGTPKKSKPSALVGWFDKKDVKAE-RVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGL 217          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  383 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            +SA+ D +      T++DYA+++ A+     +YE EFE+P  FG +GAI ++N++H++++LK + L  LP G +  TC SW+  K  +  KR+FF++K YLPS TP+ L
Sbjct:  111 ISAKTDQRI-----TVEDYAQRVWAEAPDE-KYECEFEMPEDFGPVGAIKIQNQYHRQLFLKGVELK-LPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPL 212          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 48/111 (43.24%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  383 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL--DGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTPDGL 709
            VS+ELDP+TG ++  I    +  G   D    YE+ F+VP+ FG IGA+ V N HH EM L DI +   G     V   C SW+   H    KRVFF    YLPS TP G+
Sbjct:  120 VSSELDPQTGQEREPISGAVKHSGRVDDEWDMYEATFKVPASFGPIGAVQVTNYHHSEMLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGV 230          
BLAST of FC869277 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 2
Query:  461 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSXTP 700
            G G   Y+  FE  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++  + K  R+FF N  YLPS TP
Sbjct:   89 GAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETP 169          
The following BLAST results are available for this feature:
BLAST of FC869277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LOXC1_ORYSJ1.682e-2248.72Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU2.429e-2145.05Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH4.142e-2143.36Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ORYSJ2.056e-2046.09Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH2.056e-2042.48Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ1.333e-1946.15Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX5_ORYSJ2.273e-1942.48Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX2_ARATH1.924e-1840.37Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU3.629e-1743.24Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX4_SOYBN7.082e-1341.98Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31010E02EF AbioticL1 Citrus clementina cDNA clone C31010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869277 ID=FC869277; Name=FC869277; organism=Citrus clementina; type=EST; length=709bp
GATAGCTCGGCTAGCCAAGAAATAAATTCTAAAGCATCTTCTTCTTACTT
GAAAAACAATGTTGAAGCCACAGGTTCATCAACCTCAATCTATCAAACCC
CTATTTCCATTATCCAAGCCGTTTCTCCATGGAAATTACGGCCATGCCTT
TCGTCCAGTTCAATCAACTTCTACACTTTTTAAAGGAAGTCCCAAACTTC
GGATTGGTTCTGTTCCCAGAAACACTATCAAAGCTATAGCAACTTCCACT
GAAAAATCAATCAAAGTTAAGGCTGTTGTTACTGTGAAACCAACTGTGGG
AGGCTTCCTCTCAAATATTTCTTTAGACCAAGGGTTAGATGATCTTGGAG
ATTTGTTTGGTAAATCACTCCTCTTGGAGCTTGTCAGTGCTGAGCTTGAC
CCCAAGACGGGATTGGATAAATCCACCATCCAAGATTATGCGCGCAAAAT
TGGTGCGGACGGGGATGGAAACATGCAATATGAATCAGAATTCGAAGTCC
CATCTGGATTTGGAGAAATTGGCGCAATATTAGTGGAAAATGAGCACCAC
AAAGAGATGTATTTGAAAGATATTGTTCTTGATGGTTTGCCAAATGGTCC
TGTCAACGTAACATGTAATTCATGGCTTCACTCAAAGCACGACAATAAAC
AAAAGAGAGTTTTCTTTACCAACAAGTTGTACTTGCCATCANCAACACCA
GACGGATTG
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