FC869296

Overview
NameFC869296
Unique NameFC869296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.185e-77
Identity = 134/162 (82.72%), Postives = 149/162 (91.98%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GVAGQI+PWNFPLL+F WKV PAL CGNTIVLK+AEQTPLTA Y  KLF EAGLPPGVLN+VSG+G TAGAALASHMDVDKL+FTG  DTGK++  LAA SNLKPVTLELGGKSPFI+F+DAD+D+AVELAHFALF+NQGQCCCAGSRT+VHE+VYDEFVEK
Sbjct:  197 GVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTAFYAGKLFLEAGLPPGVLNIVSGFGATAGAALASHMDVDKLAFTGSTDTGKVILGLAANSNLKPVTLELGGKSPFIVFEDADIDKAVELAHFALFFNQGQCCCAGSRTFVHEKVYDEFVEK 358
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 1.602e-74
Identity = 129/162 (79.63%), Postives = 148/162 (91.36%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GVAGQI+PWNFPLL+ +WK+ PAL CGNT+VLK+AEQTPL+AL V KL HEAGLP GV+N+VSG+G TAGAA+ASHMDVDK++FTG  D GKI+ ELA+KSNLK VTLELGGKSPFI+ +DADVDQAVELAHFALF+NQGQCCCAGSRT+VHERVYDEFVEK
Sbjct:  193 GVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSALLVGKLLHEAGLPDGVVNIVSGFGATAGAAIASHMDVDKVAFTGSTDVGKIILELASKSNLKAVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEK 354
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.151e-64
Identity = 110/162 (67.90%), Postives = 138/162 (85.19%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+F WK+APAL+CGNT+V+K AEQTPL+AL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+DK++FTG  + GK+++E A KSNLK VTLELGGKSPFI+F DAD++ A+E+ H ALFY+QGQCC A SR +V E +YDEFV +
Sbjct:  160 GVCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPAEQTPLSALHVATLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPFIVFADADLETALEVTHQALFYHQGQCCVAASRLFVEESIYDEFVRR 321
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 1.962e-64
Identity = 112/162 (69.14%), Postives = 134/162 (82.72%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG    GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E VYDEFV K
Sbjct:  161 GVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVRK 322
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.372e-64
Identity = 113/162 (69.75%), Postives = 133/162 (82.10%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVDK++FTG  + G+++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E +YDEFVE+
Sbjct:  177 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVER 338
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 4.372e-64
Identity = 113/162 (69.75%), Postives = 133/162 (82.10%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVDK++FTG  + G+++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E +YDEFVE+
Sbjct:  177 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVER 338
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 243.047 bits (619), Expect = 5.710e-64
Identity = 110/162 (67.90%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG    GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E VYDEFV++
Sbjct:  161 GVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVKR 322
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 7.457e-64
Identity = 114/162 (70.37%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVDK++FTG  + G ++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E VYDEFVE+
Sbjct:  179 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYDEFVER 340
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 7.457e-64
Identity = 114/162 (70.37%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVDK++FTG  + G ++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E VYDEFVE+
Sbjct:  160 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYDEFVER 321
[Close]
BLAST of FC869296 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 7.457e-64
Identity = 109/162 (67.28%), Postives = 136/162 (83.95%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR +V E +Y+EFV++
Sbjct:  178 GVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKR 339
The following BLAST results are available for this feature:
BLAST of FC869296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL2B4_ARATH1.185e-7782.72Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2B7_ARATH1.602e-7479.63Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1A1_HORSE1.151e-6467.90Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_RAT1.962e-6469.14Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
ALDH2_PONAB4.372e-6469.75Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN4.372e-6469.75Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
AL1A1_MOUSE5.710e-6467.90Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
ALDH2_RAT7.457e-6470.37Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_MESAU7.457e-6470.37Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
AL1A2_RAT7.457e-6467.28Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]

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Properties
Property NameValue
Genbank descriptionC31010F09EF AbioticL1 Citrus clementina cDNA clone C31010F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869296 ID=FC869296; Name=FC869296; organism=Citrus clementina; type=EST; length=508bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCTGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTTGATGATGCTGACGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAGCAAGGCACGTGCTA
TGAGGCGT
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