FC870246

Overview
NameFC870246
Unique NameFC870246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  249 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 194
            D  AGR PGYG+ TNI+NGG+ECG+G +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  269 DAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 194
            +A+D  AGR+PGYG  TNIINGG+ECG+G +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  254 SADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            +  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  244 SGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.500e-18
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  249 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 197
            +A D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  187 SAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            +A D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  257 SAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 197
            +A D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  179 SAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  253 DQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 209
            +A D  AGR+PGYG+ TNIINGGIECG GG N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  228 SAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
The following BLAST results are available for this feature:
BLAST of FC870246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CHI1_SOLTU1.203e-1854.29Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ1.571e-1863.93Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ2.680e-1860.94Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_SOLTU2.680e-1850.68Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU3.500e-1852.86Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIQ_TOBAC4.571e-1860.00Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI1_TOBAC4.571e-1853.42Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_CARPA5.970e-1858.46Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIC_SOLLC7.797e-1852.86Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIB_POPTR7.797e-1860.00Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AH08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870246 ID=FC870246; Name=FC870246; organism=Citrus clementina; type=EST; length=638bp
GGGCAGCAAATGACGTAAACGCTGGCCGGCTTCCGGGATACGGTCTAACC
ACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGC
TGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGA
TTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTT
AATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAA
TAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAG
GTGGACAACTAAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAACCTTGCCGCCCCCCCCGCCCCATCCAACTCAAAACCCAACAAAC
TTTATGCTGGCGCCCCAATTTCAACCCCATTGGCCCATTTCCCCCAAAAG
GGATTCAAATAAAATTTCCCGGGCCGCCTTTTAACACCGCCGGGACGGGA
AAACCCCGGGGTTTCCCCAATTTAACCCCTTTGCACCAATCCCCCTTTTC
CCCAGTGGGGAAAAAACCAAAAAGCCCCCCCCCATTCC
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