FC870280

Overview
NameFC870280
Unique NameFC870280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.030e-85
Identity = 165/271 (60.89%), Postives = 200/271 (73.80%), Query Frame = 2
Query:   17 VK*RTGPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----TEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWM 814
            +K RT P RS GSRF++L F      ++R  ++              S S S  S     E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NLGI+YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAEGGYVRAMYN SLCYS GEGLP + + ARKWM
Sbjct:    1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWM 271          
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: SE1L1_RAT (Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  356 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGL 781
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGV 535          
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: SE1L1_MOUSE (Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  356 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGL 781
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+
Sbjct:  383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGV 531          
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: SE1L1_MESAU (Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  356 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGL 781
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGV 535          
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: SE1L1_HUMAN (Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  356 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGL 781
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGV 535          
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: YBEQ_ECOLI (Uncharacterized protein ybeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  338 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEA-----AISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLY--QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKW 811
            G+++   +   K+ ++A+    K A +G T A    G   W +D+ EA     A+  Y+ AA  G    Q NLG  Y        + A+   +  QA++ GH  AQ  LA     G+GV  N   AA WYL++A+ G   A +  +  Y+ GEG+   ++QA  W
Sbjct:   69 GQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALG---WTLDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYW 230          
BLAST of FC870280 vs. ExPASy Swiss-Prot
Match: SE1L2_MOUSE (Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  359 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-----KKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 802
            +G+ ++  KAL  FLK A  GS  AM   G MY+E +         A   +  AA  G+  G   LG+ Y   +  P N  EA+K   +A+  G   AQ+QL    + G GV  + + A +++  A++ G   A+Y  +  Y+ G G+  S R A
Sbjct:  312 KGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTA 466          
The following BLAST results are available for this feature:
BLAST of FC870280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FB84_ARATH1.030e-8560.89F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
SE1L1_RAT1.243e-1432.89Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Se... [more]
SE1L1_MOUSE1.243e-1432.89Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l P... [more]
SE1L1_MESAU1.243e-1432.89Protein sel-1 homolog 1 OS=Mesocricetus auratus GN... [more]
SE1L1_HUMAN1.243e-1432.89Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L P... [more]
YBEQ_ECOLI1.286e-1130.91Uncharacterized protein ybeQ OS=Escherichia coli (... [more]
SE1L2_MOUSE8.337e-1131.61Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1CD02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870280 ID=FC870280; Name=FC870280; organism=Citrus clementina; type=EST; length=816bp
GGGGAGAAAGGGGAAGGTGAAGTAAAGAACAGGGCCGGATCGATCGACCG
GCTCTCGGTTCACAGCTCTTCAATTCCCGATAACCGAGAAGGACAACCGC
CGGCCAGAACTCACCGCCAGTGCACGGAAGGCTAGAATCAAACGGCGCAG
CCGCTTCAGCTGCTCACGATCAATAAAATCAACGGAGGGTCATGATTTCG
CGAGCCTACCGTTCGATGTCTTGAACAAAATCGCAGCGTCATTCACGCTG
CCTCAACTGAGAGCGGCGTCGCTGGTGTGCAAGTCATGGAACGACGCGCT
TCGGCCGTTGAGAGAGGCGATGGTGTTACTAAGATGGGGGAAACGATTCA
AGCACGGCCGAGGCGTCCGCAAGAACTTGGATAAGGCTCTCGACTCGTTC
TTGAAAGGCGCGGCTCGCGGCTCCACGCTTGCTATGGTTGACGCCGGACT
GATGTATTGGGAGATGGACAAAAAGGAGGCGGCTATTAGCTTGTATCGGC
AAGCCGCTGTGCTTGGAGATCCAGCTGGTCAGTTCAATTTGGGAATTTCT
TATTTGCAAGCGCAACCTGCAAATGCAGAGGAAGCTGTGAAGTTGTTGTA
TCAAGCATCGATTGCTGGCCATGTTCGAGCTCAGTATCAACTTGCACTTT
GCCTGCATAGAGGTCGAGGAGTGGATTTCAATCTTCAAGAGGCTGCTAGG
TGGTATTTAAGAGCTGCTGAAGGTGGCTATGTGCGTGCTATGTACAACAC
CTCTCTTTGCTATTCCTTTGGGGAAGGCTTGCCACTGAGTCACAGACAAG
CGAGGAAATGGATGAA
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