FC870392

Overview
NameFC870392
Unique NameFC870392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.398e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.398e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 125
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.091e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  141 DKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 128
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of FC870392 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.688e-16
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    6 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 125
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN I N+
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQ 180          
The following BLAST results are available for this feature:
BLAST of FC870392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ARF2_ORYSJ1.684e-18100.00ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ6.398e-1897.56ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH6.398e-1897.56ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH8.356e-1897.56ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CHLRE8.356e-1897.50ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_CATRO1.091e-1797.56ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_SALBA1.425e-1795.12ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_DAUCA1.425e-1795.12ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_VIGUN1.861e-1795.12ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_SOLTU2.688e-1692.50ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3BG10ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870392 ID=FC870392; Name=FC870392; organism=Citrus clementina; type=EST; length=382bp
GGGCTGACAAGCTTGGCCTTCATTCTCTTCGCCAGCGCCACTGGTATATC
CAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGACTG
GCTCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTGAGTTT
TGGGTTGCCGCAACTGCTGAAATACAGAGTTAACAACACATCTCAAGTGT
TCTTGCTTTCCTTCCTGTAATAGCTTCGTTGCCCGTTTTACTGTGTTTGT
TGTTTCCCTTGCAAACGTTGAGATTTGTTTCTTGTAGCTTCAGAATAATT
CTTGAATGTTTATCTTTCCTCATGGTGTCCTCTCGATAGCCTCCTTTTTC
CACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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