FC870396

Overview
NameFC870396
Unique NameFC870396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQAKY+GTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:   16 LQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQAKY+GTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:   16 LQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.129e-22
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:   14 LQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:   14 LQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:   14 LQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.311e-19
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:   14 LQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221
            LQ +Y+GTGHAD+++ EW  N  RDS +S++GH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:   14 LQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPP 206
            LQA+Y+G G+A   ++EW VN  RD+ +S VGH P+LAY A A  E   +   N ++KM++PCG PP
Sbjct:   14 LQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of FC870396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH3.644e-3488.89Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH3.644e-3488.89Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME7.129e-2263.89Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN2.293e-2058.33Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN2.293e-2058.33Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE3.311e-1956.94Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI3.099e-1751.39Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO2.299e-1247.76Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3BH03ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870396 ID=FC870396; Name=FC870396; organism=Citrus clementina; type=EST; length=461bp
GGGATCTGCAAGCCAAATACCTTGGTACTGGTCATGCTGATTTGAACAGA
TTTGAGTGGGCTGTGAACATTCAGCGTGATAGCTATGCGTCTTATGTTGG
GCATTATCCTATTTTGGCCTACTTTGCTATTGCCGAGAATGAATCTATTG
GAAGGGAACACTATAACTTTATGCAGAAAATGCTTTTGCCTTGTGGTCTG
CCCCCTGAAAGAGAAGATGATTGAGAGTTTAAGATGCTCTTTCTGAGAAC
GGAACATTTTGGGCTCCAGCTTTCTCCAGGCTTGAGGAGCATTTGTGATA
TTGCTAGGTGTTCGCTTTCAAGTAACAATGTTCATGTGAGACTGACAAAA
ACTGTGTAGTATTGTGTACTGGGTTGAATACTCTAGTGTTATTGTGATCC
TTGGATTTATATAAATTTTTATGTAGTTGATCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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