FC870396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34 Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQAKY+GTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++ Sbjct: 16 LQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34 Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQAKY+GTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+ Sbjct: 16 LQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 7.129e-22 Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQ+KY+GTGHAD +FEW N RDS ASY+GHY IL YFAIAENES R +N M++ML PCG PPE+ +D Sbjct: 14 LQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20 Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 14 LQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20 Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 14 LQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.311e-19 Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML P G P ++ ++ Sbjct: 14 LQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 221 LQ +Y+GTGHAD+++ EW N RDS +S++GH L+ F+IAENES+GR YN + KM+ PCG P+ +D+ Sbjct: 14 LQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
BLAST of FC870396 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12 Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 6 LQAKYLGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPP 206 LQA+Y+G G+A ++EW VN RD+ +S VGH P+LAY A A E + N ++KM++PCG PP Sbjct: 14 LQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80 The following BLAST results are available for this feature:
BLAST of FC870396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC870396 ID=FC870396; Name=FC870396; organism=Citrus clementina; type=EST; length=461bpback to top |