FC870397

Overview
NameFC870397
Unique NameFC870397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.581e-16
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  396 KPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  396 KPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  396 KPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTG
Sbjct:  396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  396 KPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP+G
Sbjct:  396 KPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVETF+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+PTG
Sbjct:  396 KPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
The following BLAST results are available for this feature:
BLAST of FC870397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
EF1A_MAIZE6.581e-1697.56Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA8.595e-1695.12Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_SOYBN8.595e-1695.12Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_PEA8.595e-1695.12Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYSJ8.595e-1695.12Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_ARATH8.595e-1695.12Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC1.915e-1592.68Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A2_DAUCA2.501e-1595.12Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_MANES3.266e-1595.12Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_HORVU4.265e-1592.68Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3BH04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870397 ID=FC870397; Name=FC870397; organism=Citrus clementina; type=EST; length=481bp
GGGAAGCCCATGGTTGTTGAGACCTTCTCCGATTACCCACCCCTTGGTCG
TTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGA
GTGTTGAGAAGAAGGATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCC
AAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTA
TTTTCTGTCTTTTTTTATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTT
TCTGCAAACAGCCCTATTTGGTTCCACCAGTTTGCTGTTGAGCAATTGGG
ATGTTATCTTTCTGCTTGACTGGCTGTGGTGGGGGTTCGGATTTTTATAT
TCTGAATTTGGTTAATAGCATTAAATTGAGTTGTGAAGTTTATAGACCAG
CTGCTGGATGTCAAAGTTGGTGGTTTTAATACATTTGGAAGCTCATTTTA
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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