FC870398

Overview
NameFC870398
Unique NameFC870398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 170
            +PGYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  261 VPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    6 PGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 167
            PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCY+Q+PF
Sbjct:  276 PGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 170
            +PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG NLDCY+Q+ FG
Sbjct:  196 VPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 170
            LPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G NLDCY+Q+PFG
Sbjct:  188 LPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILM 182
            +PGYG+ TNIINGGIECGQG  N+A  NRIGF+ T+C   G   G NLDCY Q+PFG  L+
Sbjct:  237 VPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    9 GYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 170
            GYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  241 GYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 294          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 194
            LPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  G NLDCY Q+PFG  L   S+
Sbjct:  253 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM*SS 203
            LPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG  L+   + +S
Sbjct:  261 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 167
            LPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCY+Q+ F
Sbjct:  272 LPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of FC870398 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 LPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 167
            +PG+GL TNIINGG+ECGQGWN  V +RIGF+  +C   G+  G NLDCY+Q+ +
Sbjct:  258 VPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSY 312          
The following BLAST results are available for this feature:
BLAST of FC870398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CHI1_GOSHI2.822e-1660.71Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_ORYSJ3.686e-1664.81Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC6.287e-1662.50Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_CARPA1.829e-1558.93Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_POPTR2.389e-1562.30Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_GOSHI2.389e-1561.11Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_PEA3.120e-1557.81Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_PHAVU6.952e-1553.73Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_ARATH6.952e-1560.00Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC9.079e-1558.18Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3BH05ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3BH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870398 ID=FC870398; Name=FC870398; organism=Citrus clementina; type=EST; length=682bp
GGCTTCCGGGATACGGTCTAACTACAAATATAATCAACGGTGGAATTGAA
TGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAG
CACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCT
ACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGATCA
TCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAA
AACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTCTTA
TTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCT
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAA
AAAAAAAAACTTGGGGGCCCCCCCCGCCCCTTCAACCTTAAACCCCAAAA
ACTTTTTGCTGGGGGCCCCAATTCAAACCCCTTTGGCCAATTCCCCCAAA
AAGGAACCCAAATAAAATTCCCGGGCCCCCTTTTTAAAACCCCCGGACGG
GAAAAACCCGGGGTTTCCCCAATTTAATCCCCTTGGAACCAATCCCCCTT
TCCCCCATTGGGGAAAAAACAAAAAAGCCCCC
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