FC870410

Overview
NameFC870410
Unique NameFC870410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length984
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 1.085e-98
Identity = 183/244 (75.00%), Postives = 201/244 (82.38%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFM-HSEHAPLSN 830
            +AFG FDDSFSL S +AYLAEFISTLLFVFAGVGSAIA+ K+T+DAALD  GLVAIA+CHGFALFVAVAIGANISGGHVNPAVTFGLA+GGQIT++TG+FYWIAQLLGS  A FLLK VTGGLAVPTH+            MEIIITF LVYTVYATAADPKKGSLGTIAP+AIG IVGANILAAGPFSGGSMNPARSFGPAVA+G+F  +W+YWV              NVFM  SEH PL++
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLAS 247          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.517e-92
Identity = 174/243 (71.60%), Postives = 196/243 (80.66%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPLSN 830
            IAFGRFDDSFS  S KAY+AEFISTL+FVFAGVGSAIA+ K+T  A LDP+GLVA+A+CHGF LFVAVAIGANISGGHVNPAVTFGLALGGQITILTG+FYWIAQLLG+IV + L++  T G+A PTH             MEII+TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL AGPFSGGSMNPARSFGPAVASG++ + WIYWV               V+M  +HAP+++
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHG-LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVAS 245          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.982e-92
Identity = 177/247 (71.66%), Postives = 192/247 (77.73%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL--SNDY 836
            IAFG   DSFS+GS KAY+AEFI+TLLFVFAGVGSAIA+NK+TADAALDP+GLVA+A+ H FALFV V+I ANISGGH+NPAVT GLA+GG ITILTG FYWIAQLLGS VA  LLK VT GLAVPTH             MEIIITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW               +VF+   H PL  S DY
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.982e-92
Identity = 177/247 (71.66%), Postives = 192/247 (77.73%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL--SNDY 836
            IAFG   DSFS+GS KAY+AEFI+TLLFVFAGVGSAIA+NK+TADAALDP+GLVA+A+ H FALFV V+I ANISGGH+NPAVT GLA+GG ITILTG FYWIAQLLGS VA  LLK VT GLAVPTH             MEIIITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW               +VF+   H PL  S DY
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.861e-91
Identity = 173/247 (70.04%), Postives = 193/247 (78.14%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL--SNDY 836
            IAFG   DSFS+ S KAY+AEFI+TLLFVFAGVGSAIA+NK+T+DAALDP+GLVA+A+ H FALFV V++ AN+SGGH+NPAVT GLA+GG ITILTG+FYWIAQ LGS VA  LLK VT GL+VPTH             MEIIITF LVYTVYATAADPKKGSLG IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG+F  NWIYW               +VF+ + HAPL  S DY
Sbjct:    4 IAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFI-TAHAPLPTSEDY 249          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 2.122e-86
Identity = 165/245 (67.35%), Postives = 185/245 (75.51%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPLSNDY 836
            +AFG   DSFS  S KAY+AEFI+TLLFVFAGVGSAIA+ ++T   ALDP+GLVAIAI H  ALFV V++ ANISGGH+NPAVTFGLA+GG ITILTG+FYWIAQLLG+ +A  LLK VT G A+PTH             MEI+ITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV              +VF+ S       DY
Sbjct:    4 LAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHG-VAGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDY 247          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 4.727e-86
Identity = 164/246 (66.67%), Postives = 185/246 (75.20%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHS-EHAPLSNDY 836
            I  G   DSFS+ S KAYL+EFI+TLLFVFAGVGSA+AF K+T+DAALDP+GLVA+A+ H FALFV V+I ANISGGH+NPAVT GLA+GG IT++TG FYWIAQ LGSIVA  LL  VT G +VPTH             MEI++TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV SG+F   WIYWV              +VF+ S   AP +  Y
Sbjct:    4 IEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAPAPTTESY 249          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 6.174e-86
Identity = 160/216 (74.07%), Postives = 180/216 (83.33%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 749
            +AFG F DS S  S KAY+AEFI+TLLFVFAGVGSAIA++++T   ALDP+GLVAIAI H FALFV V++ ANISGGH+NPAVTFGLA+GG ITILTGI YW+AQLLG+ VA FLL+ VT G A+PTH             MEI+ITF LVYTVYATAADPKKGSLGTIAP+AIGFIVGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV
Sbjct:    4 LAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHG-VSGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWV 218          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 4.002e-85
Identity = 162/239 (67.78%), Postives = 180/239 (75.31%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHA 818
            I  G   DSFS+ S KAYL+EFI+TLLFVFAGVGSA+AF K+T+D ALDP+GLVAIAI H FALFV V+I ANISGGH+NPAVT GLA+GG IT++TG FYWIAQ LGSIVA  LL  VT G +VPTH             MEI++TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV SG+    WIYWV              +VF+ S  A
Sbjct:    4 IEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFIGSYEA 242          
BLAST of FC870410 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.986e-84
Identity = 154/216 (71.30%), Postives = 176/216 (81.48%), Query Frame = 3
Query:  102 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 749
            +AFG   DSFS+ S KAY+AEFI+TLLFVFAGVGSAIAF ++T   ALDP+GLVAIA+ H  ALFV V++ AN SGGH+NPAVTFGLA+GG IT+LTG+FYW+AQLLG+ VA  LL+ VT G A+PTH              EI+ITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+ +F  NW+YWV
Sbjct:    4 LAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWV 219          
The following BLAST results are available for this feature:
BLAST of FC870410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
TIP21_ARATH1.085e-9875.00Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ1.517e-9271.60Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP2_TOBAC1.982e-9271.66Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC1.982e-9271.66Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP_ANTMA2.861e-9170.04Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_ORYSJ2.122e-8667.35Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP22_ARATH4.727e-8666.67Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_MAIZE6.174e-8674.07Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP23_ARATH4.002e-8567.78Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP22_MAIZE1.986e-8471.30Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DA07ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870410 ID=FC870410; Name=FC870410; organism=Citrus clementina; type=EST; length=984bp
GGGGCTCGATCGAGATAAAACCTTATCTTCTTCTTCTTAAGAAAGACTCG
AGAGAGTTTTTTTTTCCCTATTCTCTAGCTCTTTCTTGATCAACAATGGC
TATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAGG
CCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGTT
GGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATCC
ATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTCG
CAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGTC
ACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCTT
CTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTCA
AAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGGA
GTTGGAGCCACTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTTT
GGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTGG
GCACCATTGCACCCATTGCCATCGGTTTCATTGTCGGTGCCAACATCCTG
GCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTTCGG
GCCTGCCGTTGCCAGCGGCAACTTTCAGGACAACTGGATCTACTGGGTTG
GCCCTCTCATTGGCGGTGGCCTTGCCGGGCTCATCTATGGCAATGTGTTC
ATGCACTCTGAACATGCACCCCTATCTAATGACTATTAATTAATTAGTTA
AACTTTGTTTAAAAGTTTAGTTAAATCATTTGATCACCTGCCTTTGGCTC
TTTCTTTTTTGTAAAAAAAGAAGGAAAAGCAGCTTTGGGCTCTTTCTTCT
TTTCTTCTTTAAAAAAAAAAAAAAAAAAAAAAAA
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