FC870414

Overview
NameFC870414
Unique NameFC870414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.386e-39
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSPSKL 240
            V+S DLERCDRVSKAFQAGIVW+NCSQPCF QAPWGG K SGFGRELGEWGL+NYLSVKQVTQY+S+EPWGWYK PSKL
Sbjct:  425 VLSNDLERCDRVSKAFQAGIVWVNCSQPCFCQAPWGGTKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYKPPSKL 503          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSPS 234
            VIS D ERCDR+S+AF+AGIVWINCSQPCF+QAPWGG K SGFGRELGEWGLDNYLSVKQVT Y SN+PWGWYKSP+
Sbjct:  425 VISNDTERCDRISEAFEAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTLYTSNDPWGWYKSPN 501          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.224e-35
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSPSKL 240
            VIS DLERC+R+SKA Q+GIVWINCSQPCF QAPWGG K SGFGRELG+WGLDNYLSVKQVT+Y S+EP+GWY+ PSKL
Sbjct:  427 VISNDLERCERISKAIQSGIVWINCSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQVTKYCSDEPYGWYRPPSKL 505          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSP 231
            V SKDLERC+RVSK  ++G VW+NCSQPCF  APWGG K SGFGRELGEWG++NYL++KQVT  +SNEPWGWYKSP
Sbjct:  425 VFSKDLERCERVSKLLESGAVWVNCSQPCFVHAPWGGIKRSGFGRELGEWGIENYLNIKQVTSDISNEPWGWYKSP 500          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSP 231
            V S DLERC+R++KA + G VW+NCSQPCF QAPWGG K SGFGRELGEWG+ NYL++KQVTQ +S+EPWGWYKSP
Sbjct:  422 VFSNDLERCERITKALEVGAVWVNCSQPCFVQAPWGGIKRSGFGRELGEWGIQNYLNIKQVTQDISDEPWGWYKSP 497          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.926e-32
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSP 231
            V SKDLERC+RV+KA + G VW+NCSQPCF  APWGG K SGFGRELGEWG++NYL++KQVT  +S+EPWGWYKSP
Sbjct:  427 VFSKDLERCERVTKALEVGAVWVNCSQPCFVHAPWGGVKRSGFGRELGEWGIENYLNIKQVTSDISDEPWGWYKSP 502          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 55/77 (71.43%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVS-NEPWGWYKSP 231
            V+SKDL+RC+R++KA + G VW+NCSQPCF+QAPWGG K SGFGRELGEWG++NYL++KQVT+  S +EPWGWYKSP
Sbjct:  425 VLSKDLDRCERITKALEVGAVWVNCSQPCFTQAPWGGTKRSGFGRELGEWGIENYLNIKQVTRDTSTDEPWGWYKSP 501          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.799e-30
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 GVISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKSPSKL 240
            GVIS DLERC+R++K   +GIVW NCSQP   QAPWGG K SGFGRELGEWGL+NYLSVKQVT+Y  +E +GWY+ PSKL
Sbjct:  426 GVISDDLERCERIAKVIHSGIVWKNCSQPTLVQAPWGGNKRSGFGRELGEWGLENYLSVKQVTRYCKDELYGWYQRPSKL 505          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 VISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYKS 228
            V SKD+E+C+RV+   + G VWIN   P F+QAPWGG K SGFGRELG+ GL+ Y  VK V +        W+ S
Sbjct:  416 VWSKDIEKCERVAARLRMGTVWINDFHPYFAQAPWGGYKQSGFGRELGKIGLEEYTEVKHVYRNTKPAAVNWFNS 490          
BLAST of FC870414 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 GVISKDLERCDRVSKAFQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSNE 207
            G+ +KDL++   VS A QAG VW+NC     +Q P+GG K SG GRELGE+GL  Y  VK VT  +S +
Sbjct:  426 GIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTVTVKISQK 494          
The following BLAST results are available for this feature:
BLAST of FC870414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
BADH2_ARATH7.386e-3987.34Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
BADH1_ARATH1.540e-3684.42Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH_ORYSJ2.224e-3581.01Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_BETVU1.762e-3275.00Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_SPIOL3.006e-3273.68Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_ATRHO3.926e-3273.68Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_AMAHP2.544e-3171.43Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_HORVU4.799e-3071.25Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
BETB_BACSU1.499e-1550.67Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
AL1A1_RABIT5.330e-1350.72Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DB02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870414 ID=FC870414; Name=FC870414; organism=Citrus clementina; type=EST; length=542bp
GGGGTGATATCCAAGGATTTGGAAAGGTGTGATCGTGTAAGCAAGGCTTT
CCAAGCAGGCATTGTATGGATCAACTGCTCACAGCCATGCTTCTCTCAAG
CTCCATGGGGGGGCAAAAAACATAGTGGTTTTGGCCGTGAATTAGGGGAA
TGGGGACTTGATAATTACTTGAGCGTGAAGCAGGTCACTCAGTATGTCTC
AAATGAGCCATGGGGATGGTACAAGTCTCCTTCAAAGCTGTGAAATGAAA
ATGAGAAATTGCGGATGAAGCAAAACACAGATAGTAATGTGAGAGACGTA
CTGTACTGAAGCTATGTGCTAAGACTATGCAATAATAATAAGTAATGTAA
AATGACAGAAACACTTCAAAATAGTTTATTCCCTTAGCCATGTTGTATTT
CCCTTGTGGGATATCTTCGGCTTCCATTGGTTGTAAAACCATATTCCCAG
ACACTCTTGGAGTTTAATCATGGTTTCAGGCTCTTTAGCCTGGAATTAGA
TTCTTAGTTCTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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