FC870535

Overview
NameFC870535
Unique NameFC870535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo pygmaeus GN=NDUFA8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo abelii GN=NDUFA8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pan troglodytes GN=NDUFA8 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Homo sapiens GN=NDUFA8 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Gorilla gorilla gorilla GN=NDUFA8 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109          
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Mus musculus GN=Ndufa8 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL +G+ V  C L   + +   C +   EY  CL Y   + F  CR++Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAEPFTEYWTCLDYSNMQLFRHCRQQQAKFDQ 109          
BLAST of FC870535 vs. ExPASy Swiss-Prot
Match: NDUA8_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Bos taurus GN=NDUFA8 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 30/89 (33.71%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  130 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPGKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 393
            SS+VL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCAEPFTEYWTCIDYSGLQLFRRCRKQQAQFDE 109          
The following BLAST results are available for this feature:
BLAST of FC870535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUA8_PONPY4.846e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_PONAB4.846e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_PANTR4.846e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_HUMAN4.846e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_GORGO4.846e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_MOUSE4.102e-1134.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_BOVIN5.358e-1133.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3CG05ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870535 ID=FC870535; Name=FC870535; organism=Citrus clementina; type=EST; length=633bp
GCGGGGGAGTTTCACAGCTCCTTCTCGGTGGAGAGAAAGCTCTTATCAAA
GAAATCGACAAAAGGTTCATCTGAAAATAATCGATTGGAGATGGCAACCG
CTGTGGACCCTAGCGGTGATCCGATTCCGTCATCGGCAGTGCTAACGGCG
TCGTCTAAGCACATCGGATTGAGATGCCAACATGAAAATGTCGAGTTTTT
GAAATGCAAGCAGAAGGATCCCAATCCCGGAAAATGCCTCGATAAAGGTC
GCCAAGTCACTCGCTGCGTCCTTGGCTTGCTAAAAGATCTTCATCAAAAG
TGCACGAAGGAGATGGATGAATATGTTGGTTGCTTGTATTACCATACAAA
TGAGTTTGATTTTTGTCGCAAAGAGCAGCAAGCATTTGAGAAAACATGCC
CTCTGAACTGATTGGCAAATGATACCTGTAACTTGATGCCCAGAATAAGT
TAGGACACTTTGCAGTGAGCAAATACTATTCTTGCAAACATTTGTTTATG
GAATTTCCCTTTCACTTTGAGTTATTCCCCTTTTGTACGGTTAAGATCAC
CCACTGGAAATGTTTTTGATTGAAAAGACAAAAAAAAAAAAAAAAAAAAA
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA
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