FC870573

Overview
NameFC870573
Unique NameFC870573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9615 contig Ccv1_Contig9615:1..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.753e-69
Identity = 118/182 (64.84%), Postives = 150/182 (82.42%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQLDVDIL++GHTH+F A+++E    INPGSATGA+S++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    1 MLVLVLGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.152e-68
Identity = 117/182 (64.29%), Postives = 149/182 (81.87%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.152e-68
Identity = 117/182 (64.29%), Postives = 149/182 (81.87%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.152e-68
Identity = 117/182 (64.29%), Postives = 149/182 (81.87%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_HUMAN (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.504e-68
Identity = 117/181 (64.64%), Postives = 148/181 (81.77%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 671
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_BOVIN (Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.504e-68
Identity = 117/181 (64.64%), Postives = 148/181 (81.77%), Query Frame = 3 
Query:  132 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 186
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_CHICK (Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.377e-68
Identity = 115/181 (63.54%), Postives = 147/181 (81.22%), Query Frame = 3 
Query:  132 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC K+ +DYLK +  D+H++RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F A++HE    INPGSATGA+ ++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYHALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 186
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_XENTR (Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.467e-68
Identity = 117/182 (64.29%), Postives = 148/182 (81.32%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE  DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_XENLA (Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.467e-68
Identity = 117/182 (64.29%), Postives = 148/182 (81.32%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 674
            +LVL LGDLHIPHR   LPAKFK +LVPGKIQHI+CTGNLC KE  DYLK +  D+HI+RG++DE   YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F A++HE    INPGSATGA++++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of FC870573 vs. ExPASy Swiss-Prot
Match: VPS29_DICDI (Vacuolar protein sorting-associated protein 29 OS=Dictyostelium discoideum GN=vps29 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.127e-66
Identity = 108/181 (59.67%), Postives = 145/181 (80.11%), Query Frame = 3 
Query:  129 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 671
            + ++A+GD+H+PHR+  +P +FK +LVP KIQHI+CTGNL  KE+HDY K++  D+HI+RG+ DE T YP+TK ++IGQFK GLCHGHQ++PWGD  SLA LQRQLDVD+L++GHTH    ++  G + +NPGSATGAFS+I+ DV PSFVLMD+    + VY+Y+LIDG+VKV+KID  K
Sbjct:    1 MFIIAIGDVHVPHRSYGIPPEFKKLLVPEKIQHILCTGNLVSKEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASLAALQRQLDVDVLISGHTHVLEVFESNGKLFVNPGSATGAFSNISNDVIPSFVLMDVQSNNITVYIYKLIDGQVKVEKIDHVK 181
The following BLAST results are available for this feature:
BLAST of FC870573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VPS29_DANRE6.753e-6964.84Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_RAT1.152e-6864.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_PONAB1.152e-6864.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_MOUSE1.152e-6864.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_HUMAN1.504e-6864.64Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_BOVIN1.504e-6864.64Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_CHICK4.377e-6863.54Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENTR7.467e-6864.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENLA7.467e-6864.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DICDI9.127e-6659.67Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AC05ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2AC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870573 ID=FC870573; Name=FC870573; organism=Citrus clementina; type=EST; length=818bp
GGGGGCGCAACTGAAGAAGCTCATAAAAACGACGACAGAGGTTTTGAATT
TTGATGGGCGTTGTCAAAAGAGCTCCTAAATAATCAAATCTCCCTGGGGT
TTGATTTGATAGTCGAACGTTGAAGATGGTGTTGGTCTTAGCGTTGGGCG
ATTTACACATACCACATAGAGCAGCTGATTTGCCTGCCAAGTTTAAGTCC
ATGCTTGTTCCTGGCAAGATCCAACACATCGTTTGCACTGGCAATCTCTG
CATCAAAGAAGTTCATGACTACCTAAAGATTATTTGTCCTGACTTGCATA
TTATTCGTGGTGAATATGATGAAGAGACACGATATCCTGAGACCAAAACG
CTAACTATTGGTCAATTCAAACTAGGACTGTGCCATGGTCATCAGGTTAT
TCCGTGGGGGGACCTAGACTCACTAGCCATGTTACAGAGGCAGCTGGATG
TAGACATACTTGTGACTGGTCACACTCATCAGTTTACTGCTTATAAACAC
GAGGGAGGTGTGGTTATAAACCCAGGTTCTGCCACCGGTGCTTTCAGCAG
CATCACCTACGATGTTAATCCTAGTTTCGTCCTCATGGACATCGATGGCC
TGCGGGTTGTGGTCTATGTTTATGAACTCATTGATGGGGAGGTTAAAGTT
GACAAGATTGATTTTAAGAAAACCAGCACATGTCACTCTGCTCATTAAGA
ACAAAGCTCAGATTTCAATTTTGTTGAACTGACTCTCGGATTCACCATAT
ATGCGTGAGTCTGCAATACATGTGATTCCATTCTCTGTATGTGATTGGAA
GATTTTGGTTTGTTTTGA
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