FC870593

Overview
NameFC870593
Unique NameFC870593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC870593_ssr633 microsatellite FC870593_ssr633:633..644. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:34..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_XENTR (Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.025e-23
Identity = 75/213 (35.21%), Postives = 104/213 (48.83%), Query Frame = 3
Query:  192 PKQVIGPDENG-VKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            P++VI    NG +K + EYK ND+G K+KI    R  K+   + SK    R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   45 PQEVI----NGKIKTITEYKLNDEGKKIKIV---RTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITSKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRET 243          

HSP 2 Score: 23.0978 bits (48), Expect = 1.025e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  244 DLQELFRPFGS 254          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_HUMAN (Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.334e-23
Identity = 73/212 (34.43%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  189 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            PPK+VI      +K V EYK ++DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   55 PPKEVIN---GNIKTVTEYKIDEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRET 253          

HSP 2 Score: 23.0978 bits (48), Expect = 1.334e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  254 DLQELFRPFGS 264          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_MOUSE (Eukaryotic translation initiation factor 3 subunit G OS=Mus musculus GN=Eif3g PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.735e-23
Identity = 73/212 (34.43%), Postives = 99/212 (46.70%), Query Frame = 3
Query:  189 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            PPK+VI      +K V EYK  +DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   55 PPKEVIN---GNIKTVTEYKIEEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRET 253          

HSP 2 Score: 23.0978 bits (48), Expect = 1.735e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  254 DLQELFRPFGS 264          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EI3GA_XENLA (Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus laevis GN=eif3g-A PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.737e-23
Identity = 73/212 (34.43%), Postives = 101/212 (47.64%), Query Frame = 3
Query:  192 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            P++VI      +K + EYK NDD   VKI    R  K+   + SK   +R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   43 PREVIN---GNIKTITEYKLNDDDKTVKIV---RTFKIETVKASKVVAQRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRET 241          

HSP 2 Score: 23.0978 bits (48), Expect = 1.737e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  242 DLQELFRPFGS 252          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_RAT (Eukaryotic translation initiation factor 3 subunit G OS=Rattus norvegicus GN=Eif3g PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.258e-23
Identity = 73/212 (34.43%), Postives = 99/212 (46.70%), Query Frame = 3
Query:  189 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            PPK+VI      +K V EYK  +DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   55 PPKEVIN---GNIKTVTEYKVEEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRET 253          

HSP 2 Score: 23.0978 bits (48), Expect = 2.258e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  254 DLQELFRPFGS 264          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_BOVIN (Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus GN=EIF3G PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.939e-23
Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  189 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            PPK+VI      +K V EY+ ++DG K KI    R+      + SK    R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   55 PPKEVIN---GNIKTVTEYRIDEDGKKFKIVRTFRIE---TRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRET 253          

HSP 2 Score: 23.0978 bits (48), Expect = 2.939e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  254 DLQELFRPFGS 264          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_DANRE (Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio GN=eif3g PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.830e-23
Identity = 72/210 (34.29%), Postives = 102/210 (48.57%), Query Frame = 3
Query:  192 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL-TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGK-GGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI---------DKPXXXXXXXXXXXXTK-GTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            PK+ +   +  +K V EYK +DDG K KI    R  K+   + SK    R+NW KFG++  +  G  + T   ++++ +       S  E+  A       + K  G  ++ CR C  KGDHWT+RCP+KD   P +  +         +K              K G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   29 PKETV---KGNIKTVTEYKIDDDGQKFKII---RTFKIETRKASKAVARRKNWKKFGNSEYDAPGPNVATTTVSDDVFMTFI----SSKEDLNAQDQDEDPMNKLKGQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKAAEPEPAQPVQNKTGKYVPPSLRDGGTRRGESMQPNRRADDNATIRVTNLSEDTRET 226          

HSP 2 Score: 23.0978 bits (48), Expect = 3.830e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  227 DLQELFRPFGS 237          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EI3GB_XENLA (Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus laevis GN=eif3g-B PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.478e-23
Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  192 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE---------TFIDK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRET 776
            P++VI      +K + EYK ND   K+KI    R  K+   + SK    R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +         +  DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRET
Sbjct:   43 PREVIN---GNIKTITEYKLNDKDKKIKIV---RTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTADKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRET 241          

HSP 2 Score: 23.0978 bits (48), Expect = 6.478e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  778 DLLELFRPFGA 810
            DL ELFRPFG+
Sbjct:  242 DLQELFRPFGS 252          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EI3G2_DROAN (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila ananassae GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.035e-21
Identity = 67/191 (35.08%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  216 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKA-AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXXXTK-GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTRET 776
            E   K V EYKFNDDG KVK+    ++ K     +SK    RR W KFGD+  +  G  S+ TM S E  +L        +  ET+  AG ++A+          CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ GA   G   R R+D ++VR++NLSE   ET
Sbjct:   28 EGDYKYVTEYKFNDDGKKVKVVRTFKIEKQV---VSKAVARRRGWVKFGDSRLDKPGPNSQTTMASEEIFMLFMGSKEFEQTHETQMDAGKNIAK----------CRICN--GEHWSVNCPYKGTSMDSKTLMESKANAAAAAALNDPSKPGKYVPPFMKDGAGGAGGKGRERDDSSAVRISNLSESMTET 203          
BLAST of FC870593 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 3
Query:  219 NGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTRE 773
            +G K +IE++ +D+G KVK+    R + +   R+     ER+ W KFG    ++ G  +R T V     L  +     +K EE   A  + A++   G+ ++ CR C  KG+H+T++CP+K +  P +                   KG Y+ P +RAG+ R   D    R R+D  ++RVTNLS+DTRE
Sbjct:   29 DGTKTMIEFRIDDNGKKVKVTRVIR-KTVITERVQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAKGSSVVRCRAC--KGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTRE 215          
The following BLAST results are available for this feature:
BLAST of FC870593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EIF3G_XENTR1.025e-2335.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_HUMAN1.334e-2334.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MOUSE1.735e-2334.43Eukaryotic translation initiation factor 3 subunit... [more]
EI3GA_XENLA1.737e-2334.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_RAT2.258e-2334.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOVIN2.939e-2333.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_DANRE3.830e-2334.29Eukaryotic translation initiation factor 3 subunit... [more]
EI3GB_XENLA6.478e-2333.96Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROAN3.035e-2135.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCHPO3.710e-1932.11Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2AD04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2AD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870593 ID=FC870593; Name=FC870593; organism=Citrus clementina; type=EST; length=812bp
GGGGTTTCACAAAAAATCGAAATCTCAAACCCTAAAACGCTTTGTCTCGC
AACCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCGAAAAAGAT
GTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTGGAGCGAAC
TGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGCCTAAACAA
GTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAATACAAGTT
TAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCGCGTGCGCA
AGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGAGAAACTGG
GCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGACTTACCAT
GGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCCTGGTAGCA
AACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAACTTGGGAAA
GGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAGGGTGATCA
CTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGCTGAGACAT
TCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTGCTGGCGCG
ACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCGGAGAGAAC
TGGAACTGATATGAGACGCAGGAATGATGAGAACTCTGTTAGGGTCACCA
ACCTATCGGAGGACACTCGGGAAACCTGACTTGCTTGAGCTCTTCCGGCC
TTTTGGTGCTGT
back to top