FC870621

Overview
NameFC870621
Unique NameFC870621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig148 contig Ccv1_Contig148:289..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC870621 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 7.066e-29
Identity = 58/76 (76.32%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:   14 NSVDFDHSGSYLAVASAYIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 241
            NSV+FD SGSYL +A++ I+VYQ ASVKA+WN IKT PDLSGTGKATCVKFG DA+Y+AVGSMDRNLR+FGLPG++
Sbjct:  438 NSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGTGKATCVKFGSDAQYVAVGSMDRNLRIFGLPGDE 513
[Close]
BLAST of FC870621 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.574e-28
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:   14 NSVDFDHSGSYLAVASAYIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSES 256
            NSV+FDHSGSYL +A++ IRV+Q ASVKA+WN IKT PDLSGTGKAT VKFG D+KYIAVGSMDRNLR+FGLP +D   +S
Sbjct:  439 NSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIKTLPDLSGTGKATSVKFGLDSKYIAVGSMDRNLRIFGLPDDDNTEDS 519
The following BLAST results are available for this feature:
BLAST of FC870621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PR19B_ARATH7.066e-2976.32Pre-mRNA-processing factor 19 homolog 2 OS=Arabido... [more]
PR19A_ARATH1.574e-2874.07Pre-mRNA-processing factor 19 homolog 1 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2AE11ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870621 ID=FC870621; Name=FC870621; organism=Citrus clementina; type=EST; length=620bp
GAGGACGCCTACCAACTCAGTGGATTTCGACCATAGTGGATCTTACCTCG
CAGTTGCAAGTGCATATATAAGAGTCTACCAAGTGGCCAGCGTTAAAGCT
GATTGGAATTGTATCAAAACTTTTCCTGATTTATCAGGCACAGGTAAGGC
AACTTGTGTGAAATTTGGTCCAGATGCGAAATACATTGCTGTGGGATCAA
TGGACCGCAATCTACGTGTATTTGGTCTGCCTGGCAATGATGCTCCATCA
GAATCATAGAGCATTCTAAAACTTAACCAATTTGAGAGGTGGGCACTGCC
ATTTTTTGCAGCCTCCATTAGTGTTTTTGTTCCGTTGGAGATGACGTGAT
TGGTGGAGTGCTGCTAGTTCTGGTTCCTTACATGTCTCTGTTCCTAAATT
GTGGCATAGTGTTGTAGACCGGGTCTGGGATTCGAGGGCGAAAAAAATGG
GGAAACTGTTTCTTTACAGCCAATCTTTTGTATCACCTTCACTGTTAAAC
TTTCAAAATAATTACCCTGTTTATTTTGTACTACTGTTATTATTTTTCAG
AGAATCTACTGTTTTACGGATGCTAACTTCCATTTGAAACTTAATATCAA
AATTGCTTTTATGAGCGAAA
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