FC870666

Overview
NameFC870666
Unique NameFC870666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:270..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870666 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20
Identity = 79/292 (27.05%), Postives = 131/292 (44.86%), Query Frame = 1
Query:   13 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFADAGYFINAKDVSGASHIEQF-YAQVVATHGSAKH----LPASCTSRLSPG---LCFFPQYMARQITTPLFIINAAYDSWQ--IKNILAPGVADPHGTWHSCKLDINNCSPTQLQTMQSFRTQFLNA 840
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  AD+G+F++ K    +  I+    A   A     ++    +P  C  +   G    CFF   +   +  P+F++   +D  Q  + N+   G     G W    L I N       T++  +  F  A
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQLTVDNVHLTGQPVQEGQW----LYIQNLGRELRGTLKDVQASFAPA 392          
BLAST of FC870666 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.195e-19
Identity = 67/247 (27.13%), Postives = 118/247 (47.77%), Query Frame = 1
Query:   13 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD----NFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQF-YAQVVATHGSAKH----LPASCTSRLSPG---LCFFPQYMARQITTPLFIINAAYDSWQI 711
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG   +L+ D        L     +V+  AD+G+F++ K       ++    A   A     ++    +P  C  +   G    CFF   +   +  P+F++   +D  Q+
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHTDCVDTITCAPTEAIRRGIRYWNGVVPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQL 344          
The following BLAST results are available for this feature:
BLAST of FC870666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE1.703e-2027.05Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN4.195e-1927.13Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2AH03ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870666 ID=FC870666; Name=FC870666; organism=Citrus clementina; type=EST; length=877bp
GGGGGAGCTGTTTGTTTGGATGGTAGCCCGCCTGCTTACCATTTTGATAA
GGGGTTTGGTGCTGGGATCAATAATTGGTTGGTTCACATTGAGGGAGGAG
GATGGTGCAACAATGTCACAACTTGTCTTGAACGTAAGAAAACCCGTTTA
GGTTCATCTAAGCAAATGGTCAAGGTAGTTGCTTTCTCTGGGATGCTGAG
CAACAAGCAAAAATTTAACCCAGACTTCTACAATTGGAATAGAATCAAGG
TTAGATACTGTGATGGTGCATCGTTTACTGGAGATGTGGAGGCTGTCAAT
CCAGCAAATAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCAT
GGAGGATCTAATGGCTAAAGGGATGAAAAATGCTCAAAATGCTGTTCTTT
CTGGCTGCTCAGCTGGGGGGTTGACTTCAATTTTGCATTGTGATAACTTC
CGAGCTCTCTTCCCTGTGGGTACTAAAGTAAAATGCTTTGCAGATGCTGG
TTATTTTATCAACGCGAAGGATGTTTCTGGAGCAAGTCACATTGAGCAGT
TTTATGCTCAAGTGGTCGCAACACATGGATCAGCTAAGCATTTGCCAGCA
TCCTGCACTTCAAGATTGAGCCCAGGACTGTGTTTCTTCCCACAATACAT
GGCACGGCAAATAACAACACCGCTATTTATCATAAATGCGGCCTATGATT
CATGGCAGATAAAGAACATTTTGGCACCAGGTGTTGCTGATCCACATGGA
ACTTGGCATAGCTGCAAGCTTGATATAAACAACTGCTCACCTACTCAGCT
GCAAACAATGCAAAGTTTCAGGACACAATTCTTAAATGCATTGGCTGGAC
TGGGCATCTCTTCATCCAGAGGGATGT
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