FC870676

Overview
NameFC870676
Unique NameFC870676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9632 contig Ccv1_Contig9632:73..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC870676 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.739e-37
Identity = 96/195 (49.23%), Postives = 120/195 (61.54%), Query Frame = 1 
Query:   58 DHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLG-PGGV-PSQMNLPVVAPSMVNNNIGN----NRPQVMSASSSQPS-IPGYSANQPAHPHMQF-------------RPQQMFPLGQRMPLTSLQ--ASSSAPSNVMF--NARGGP---------QPTLNHPMIR 543
            DHEEREIQRLSANI+NHQLKR+ELKLKQFAE+ETLLM+ECEQVEK RQRF+ ER R++S R G PGG+ P   NL  ++ S   NNI +       Q  ++++SQPS IPG+S N      M F             + QQ F  G R+PL ++Q  A S+A  NVMF  N    P         QP+ +HPM+R
Sbjct:  599 DHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGISPQTNNLQGMSLSTGGNNINSLMHQQHQQQQASATSQPSIIPGFSNNPQVQAQMHFMARQQQQQQQQQQQQQQAFSFGPRLPLNAIQTNAGSTASPNVMFGNNQLNNPAAAGAASINQPSFSHPMVR 793
The following BLAST results are available for this feature:
BLAST of FC870676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SWI3C_ARATH7.739e-3749.23SWI/SNF complex subunit SWI3C OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3DF02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870676 ID=FC870676; Name=FC870676; organism=Citrus clementina; type=EST; length=887bp
GGGGCTGCTGCTAAAGCTGGTCTTGCTGCTGCAGCAACAAAAGCAAAACT
GTTTGCTGATCATGAAGAACGAGAAATTCAGAGGCTATCTGCTAATATCA
TAAATCATCAGTTGAAAAGATTGGAGCTGAAGCTGAAGCAGTTTGCAGAA
GTGGAAACCTTGCTAATGAGAGAATGTGAACAAGTAGAGAAGGCAAGGCA
GAGGTTTGCCACCGAGCGGACCCGCATAGTATCAACTCGGTTGGGACCTG
GTGGAGTCCCTTCACAAATGAATCTACCTGTTGTTGCGCCTTCCATGGTT
AACAATAACATTGGCAACAATCGGCCACAAGTGATGTCAGCCTCATCTTC
GCAACCAAGCATTCCAGGTTACAGCGCCAACCAACCAGCCCATCCCCACA
TGCAGTTTAGGCCCCAACAGATGTTTCCGTTGGGGCAGAGGATGCCTCTA
ACATCTTTACAAGCATCATCTTCAGCACCTTCGAATGTCATGTTTAACGC
TCGAGGGGGTCCCCAACCTACTTTGAATCATCCGATGATCAGGTCTGCGT
CGGGAACTAGTTCGGGTCTTGGTTAAAGCAGGTACTCAGACTCCTTTAAT
ACAATTCAATAGGATCATTGCTTACTTTCTGGAATGAGCCAGGGAAGTGT
TTTACTTTAGATCGGTATAGAAGTTTCTCTGGGTAGTTTGTAGGTCTTGT
AACAGCACACGACTGAGGTGGTGTTTGGATCTGATAATGAATTCTTGCAC
CGGAAAATGAAATGTTAATTTTGTAAAATGGATTATTTTAGCGTAGAATG
TCCAATAAATATGTCATTCTAACTTCTTATTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
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