FC870690
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_RAT (Ribonuclease H2 subunit B OS=Rattus norvegicus GN=Rnaseh2b PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.981e-16 Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 3 Query: 168 DSSATGSSGGRLLSLCHPKSGQKTRYLLVDGVLQ---ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL--PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVLDQNY 641 D+S SG + L +P SG+ YL +D LQ E+ K+ + SWF+ V G ++ ATP+DP+F++L +K G++ GK++ LD+++ D +P LL P E ++ V E KE+ S K+++ K L WL KV QT++ L N+ Sbjct: 25 DASRKSKSGLLFVKLVNPHSGEGATYL-IDACLQKLFEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYL----IKAGKE-GKYQPLDQVVVDDKFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSTEKTLKWLEKKV---NQTVAALKANH 178
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_XENLA (Ribonuclease H2 subunit B OS=Xenopus laevis GN=rnaseh2b PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14 Identity = 56/168 (33.33%), Postives = 91/168 (54.17%), Query Frame = 3 Query: 153 LLIAPDSSATG----SSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL---PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVL 629 +L+AP+S + S + L P + + +L ++ Q E+ + Y+SWF+G V +DG + ATPIDP+F++LP +K ++ GKF+ +++I+ + +P LL P+A++ + V E KEIGS KF + K L WL KV QT+ VL Sbjct: 17 VLLAPESLSGDAKNLSDETVFVKLRAPFADKGAMFLFINSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPLFLVLPYL----IKADKEQGKFQPVEQIVVDEEFPSCGMLLQCTPVAKS-LHHVTEEKEIGSKKFHKYSKEKALVWLKKKV---DQTVKVL 176
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_MOUSE (Ribonuclease H2 subunit B OS=Mus musculus GN=Rnaseh2b PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.662e-14 Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 204 LSLCHPKSGQKTRYLLVDGVLQ---ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL--PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVLDQN 638 + L +P SG+ YL +D LQ E+ K+ + SWF+ V G ++ ATP+DP+F++L LK G++ GK++ LD+++ D +P LL P E ++ V E KE+ S K+++ K L WL KV QT+ L N Sbjct: 38 VKLANPHSGEGATYL-IDMCLQQLFEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYL----LKAGKE-GKYQPLDQVVVDDTFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSSEKTLKWLEKKV---NQTVVALKAN 178
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_BOVIN (Ribonuclease H2 subunit B OS=Bos taurus GN=RNASEH2B PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14 Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 3 Query: 168 DSSATGSSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYL--LPLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVLDQN 638 D S SG + L +P SG+ T YL + Q E+ K+ SWF+ V G ++ ATP+DP+F++L +A K GKF+ LD+++ D +P L LP E +Q V E KE+ K+++ K L WL KV QT++ L N Sbjct: 26 DDSKKMKSGLVFVKLANPCSGEGTIYLFNMCLPQLFEIKVFKEKNHSWFINESVQSGGLLHFATPVDPLFLLLHYLIKA--DKESFQGKFQPLDQVVMDDMFPDCILLLKLPELEKLLQHVTEEKEVDKKKYYKYSKEKTLKWLGKKV---NQTMAALKTN 181
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_XENTR (Ribonuclease H2 subunit B OS=Xenopus tropicalis GN=rnaseh2b PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.953e-14 Identity = 51/158 (32.28%), Postives = 86/158 (54.43%), Query Frame = 3 Query: 153 LLIAPDSSATG----SSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL---PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKV 599 +L+AP+S + S L P + + + +L +D Q E+ + Y+SWF+G V +DG + ATPIDP+F++L +K ++ GKF+ +++I+ + +P LL P++++ + V E KEIGS KF++ K L WL KV Sbjct: 17 VLLAPESLSDDAKNLSDKTIFAKLRAPCTDKGSMFLFIDSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPMFLVLHYL----IKADKEQGKFQPVEQIVVDEEFPSCSMLLQCTPVSKS-LHHVTEEKEIGSKKFYKYSKEKTLVWLKKKV 169
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_SCHPO (Ribonuclease H2 subunit B OS=Schizosaccharomyces pombe GN=rnh202 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.959e-12 Identity = 49/155 (31.61%), Postives = 84/155 (54.19%), Query Frame = 3 Query: 186 SSGGRLLSLCHPKSGQKTRYLLVDGVLQELNWLKQSYK--SWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEII--FIDGYPGY----QYLLPLAENCMQVVCEVKE-IGS-SKFFRLDDLKVLAWLYCKVCALKQTL 620 S+ + + L HP +G+ RYLL + L ++ + S K SWF+G++V DG +Y TPID + ++LPI +E + ++P ++ ++ I F + P Y + L P N + +C+V E +GS K F+LD+ V+ L K ++ L Sbjct: 12 STNQQFVELSHPLTGRPLRYLLTNDHLLQILQVGDSSKQRSWFVGDHVVSDGYLYVCTPIDLLALVLPIIQELTWSRRKEPNRYVSFEDFIEHFDNMGPHYPRVSEVLSPNLLNTLHRICKVNEPVGSLPKTFQLDESSVVKILLRKAKVAQENL 166
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_HUMAN (Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11 Identity = 59/203 (29.06%), Postives = 97/203 (47.78%), Query Frame = 3 Query: 168 DSSATGSSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYL--LPLAENCMQVVCEVK---EIGSSKFFRLDDLKVLAWLYCK----VCALK----------QTLSVLDQNYAAQD-EKDTLANAVSILGEYVKDE 710 D+S +G + L +P SG+ YL + Q E+ K+ + SWF+ V G ++ ATP+DP+F++L L K + GKF+ LD+++ + +P L LP E + V E K EI + K+++ K L WL K V ALK Q+ + + A+ D E+D + A ++ +Y+ E Sbjct: 26 DASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHY-----LIKADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKE 223 The following BLAST results are available for this feature:
BLAST of FC870690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC870690 ID=FC870690; Name=FC870690; organism=Citrus clementina; type=EST; length=811bpback to top |