FC870690

Overview
NameFC870690
Unique NameFC870690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_RAT (Ribonuclease H2 subunit B OS=Rattus norvegicus GN=Rnaseh2b PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.981e-16
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  168 DSSATGSSGGRLLSLCHPKSGQKTRYLLVDGVLQ---ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL--PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVLDQNY 641
            D+S    SG   + L +P SG+   YL +D  LQ   E+   K+ + SWF+   V   G ++ ATP+DP+F++L       +K G++ GK++ LD+++  D +P    LL  P  E  ++ V E KE+ S K+++    K L WL  KV    QT++ L  N+
Sbjct:   25 DASRKSKSGLLFVKLVNPHSGEGATYL-IDACLQKLFEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYL----IKAGKE-GKYQPLDQVVVDDKFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSTEKTLKWLEKKV---NQTVAALKANH 178          
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_XENLA (Ribonuclease H2 subunit B OS=Xenopus laevis GN=rnaseh2b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 56/168 (33.33%), Postives = 91/168 (54.17%), Query Frame = 3
Query:  153 LLIAPDSSATG----SSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL---PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVL 629
            +L+AP+S +      S     + L  P + +   +L ++   Q  E+    + Y+SWF+G  V +DG +  ATPIDP+F++LP      +K  ++ GKF+ +++I+  + +P    LL   P+A++ +  V E KEIGS KF +    K L WL  KV    QT+ VL
Sbjct:   17 VLLAPESLSGDAKNLSDETVFVKLRAPFADKGAMFLFINSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPLFLVLPYL----IKADKEQGKFQPVEQIVVDEEFPSCGMLLQCTPVAKS-LHHVTEEKEIGSKKFHKYSKEKALVWLKKKV---DQTVKVL 176          
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_MOUSE (Ribonuclease H2 subunit B OS=Mus musculus GN=Rnaseh2b PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.662e-14
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  204 LSLCHPKSGQKTRYLLVDGVLQ---ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL--PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVLDQN 638
            + L +P SG+   YL +D  LQ   E+   K+ + SWF+   V   G ++ ATP+DP+F++L       LK G++ GK++ LD+++  D +P    LL  P  E  ++ V E KE+ S K+++    K L WL  KV    QT+  L  N
Sbjct:   38 VKLANPHSGEGATYL-IDMCLQQLFEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYL----LKAGKE-GKYQPLDQVVVDDTFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSSEKTLKWLEKKV---NQTVVALKAN 178          
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_BOVIN (Ribonuclease H2 subunit B OS=Bos taurus GN=RNASEH2B PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  168 DSSATGSSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYL--LPLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKVCALKQTLSVLDQN 638
            D S    SG   + L +P SG+ T YL    + Q  E+   K+   SWF+   V   G ++ ATP+DP+F++L    +A   K    GKF+ LD+++  D +P    L  LP  E  +Q V E KE+   K+++    K L WL  KV    QT++ L  N
Sbjct:   26 DDSKKMKSGLVFVKLANPCSGEGTIYLFNMCLPQLFEIKVFKEKNHSWFINESVQSGGLLHFATPVDPLFLLLHYLIKA--DKESFQGKFQPLDQVVMDDMFPDCILLLKLPELEKLLQHVTEEKEVDKKKYYKYSKEKTLKWLGKKV---NQTMAALKTN 181          
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_XENTR (Ribonuclease H2 subunit B OS=Xenopus tropicalis GN=rnaseh2b PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.953e-14
Identity = 51/158 (32.28%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  153 LLIAPDSSATG----SSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYLL---PLAENCMQVVCEVKEIGSSKFFRLDDLKVLAWLYCKV 599
            +L+AP+S +      S       L  P + + + +L +D   Q  E+    + Y+SWF+G  V +DG +  ATPIDP+F++L       +K  ++ GKF+ +++I+  + +P    LL   P++++ +  V E KEIGS KF++    K L WL  KV
Sbjct:   17 VLLAPESLSDDAKNLSDKTIFAKLRAPCTDKGSMFLFIDSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPMFLVLHYL----IKADKEQGKFQPVEQIVVDEEFPSCSMLLQCTPVSKS-LHHVTEEKEIGSKKFYKYSKEKTLVWLKKKV 169          
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_SCHPO (Ribonuclease H2 subunit B OS=Schizosaccharomyces pombe GN=rnh202 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.959e-12
Identity = 49/155 (31.61%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  186 SSGGRLLSLCHPKSGQKTRYLLVDGVLQELNWLKQSYK--SWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEII--FIDGYPGY----QYLLPLAENCMQVVCEVKE-IGS-SKFFRLDDLKVLAWLYCKVCALKQTL 620
            S+  + + L HP +G+  RYLL +  L ++  +  S K  SWF+G++V  DG +Y  TPID + ++LPI +E    + ++P ++   ++ I  F +  P Y    + L P   N +  +C+V E +GS  K F+LD+  V+  L  K    ++ L
Sbjct:   12 STNQQFVELSHPLTGRPLRYLLTNDHLLQILQVGDSSKQRSWFVGDHVVSDGYLYVCTPIDLLALVLPIIQELTWSRRKEPNRYVSFEDFIEHFDNMGPHYPRVSEVLSPNLLNTLHRICKVNEPVGSLPKTFQLDESSVVKILLRKAKVAQENL 166          
BLAST of FC870690 vs. ExPASy Swiss-Prot
Match: RNH2B_HUMAN (Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 59/203 (29.06%), Postives = 97/203 (47.78%), Query Frame = 3
Query:  168 DSSATGSSGGRLLSLCHPKSGQKTRYLLVDGVLQ--ELNWLKQSYKSWFLGNYVCEDGSIYAATPIDPVFIMLPIFEEARLKKGEDPGKFRQLDEIIFIDGYPGYQYL--LPLAENCMQVVCEVK---EIGSSKFFRLDDLKVLAWLYCK----VCALK----------QTLSVLDQNYAAQD-EKDTLANAVSILGEYVKDE 710
            D+S    +G   + L +P SG+   YL    + Q  E+   K+ + SWF+   V   G ++ ATP+DP+F++L       L K +  GKF+ LD+++  + +P    L  LP  E  +  V E K   EI + K+++    K L WL  K    V ALK          Q+ +    + A+ D E+D +  A  ++ +Y+  E
Sbjct:   26 DASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHY-----LIKADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKE 223          
The following BLAST results are available for this feature:
BLAST of FC870690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RNH2B_RAT4.981e-1633.74Ribonuclease H2 subunit B OS=Rattus norvegicus GN=... [more]
RNH2B_XENLA2.093e-1433.33Ribonuclease H2 subunit B OS=Xenopus laevis GN=rna... [more]
RNH2B_MOUSE4.662e-1434.67Ribonuclease H2 subunit B OS=Mus musculus GN=Rnase... [more]
RNH2B_BOVIN6.089e-1434.16Ribonuclease H2 subunit B OS=Bos taurus GN=RNASEH2... [more]
RNH2B_XENTR7.953e-1432.28Ribonuclease H2 subunit B OS=Xenopus tropicalis GN... [more]
RNH2B_SCHPO1.959e-1231.61Ribonuclease H2 subunit B OS=Schizosaccharomyces p... [more]
RNH2B_HUMAN1.658e-1129.06Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASE... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3DG06ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870690 ID=FC870690; Name=FC870690; organism=Citrus clementina; type=EST; length=811bp
GGGGGGTTTCCCTCCCACGTCTTTTCTGCTTTCCGGACTATTATTCTCTT
CAGTGTTATCTACCACCGGCACCGGCGGTGTTGACTGTCAATCTCGACCA
CCAGAGGAAAATTGTCTGAATGGCTTGGTGCAAAGATGTTGAGGGAACTC
GTCTTCTCATTGCACCTGATTCGAGTGCAACTGGAAGTAGTGGTGGACGT
TTGCTATCACTCTGCCATCCAAAATCAGGTCAGAAGACCCGCTACCTCCT
TGTTGATGGGGTCCTCCAAGAACTTAACTGGCTGAAGCAATCATACAAGT
CTTGGTTTCTGGGGAATTATGTTTGTGAAGATGGCAGCATATATGCTGCT
ACCCCAATAGACCCTGTTTTCATAATGTTGCCAATTTTTGAAGAAGCTAG
ACTGAAGAAGGGTGAGGATCCCGGGAAATTCAGACAATTAGATGAGATAA
TTTTCATTGATGGCTACCCTGGATATCAATATTTATTACCTCTTGCTGAG
AACTGTATGCAAGTAGTTTGTGAAGTTAAAGAAATTGGATCATCAAAGTT
CTTTAGGCTTGATGACTTGAAGGTTTTAGCTTGGTTATACTGCAAGGTAT
GTGCCTTGAAACAGACTCTTTCGGTGTTGGACCAGAACTACGCTGCTCAA
GATGAAAAGGACACTTTAGCCAATGCTGTTTCAATACTAGGAGAGTACGT
GAAGGATGAGTCTTGGTTGAAGCTTTTGTGTAAACATTTGAATTTAGATC
TACCTAAGGAGACCGGAAAAGCACCATACAATGAGGTGTTCCCCAGTTCT
CTGGGAAGTAA
back to top