FC870692

Overview
NameFC870692
Unique NameFC870692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9656 contig Ccv1_Contig9656:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGP-ITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSG-VDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTLDNILNKLHLVQDHQ 507
            YT +MF KF  EVE MYSC  T  V  DGP + ++VKE     S+ ++ R F+VLYN S  EV C+C  FNF GYL RH LCVLN +G++EIP  YIL RWRKD KR +  D+  +G VD  + V   D LYK  +QVV+EG  S D YKV +Q L   L+K+H V++ Q
Sbjct:  533 YTRDMFKKFQIEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPLRYILPRWRKDYKRLHFADNGLTGFVDGTDRVQWFDQLYKNSLQVVEEGAVSLDHYKVAMQVLQESLDKVHSVEEKQ 702          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FRS8_ARATH (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.032e-27
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPIT-YIVKEEFEVGSNEKDS-RAFDVLYN---ASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTLDNILNKLHLVQD 501
            +T E+F +F  EV AM SC     V ++G  + Y+VKE       E D  R F+V+Y    A+ +   CVCG F+F GY  RH+L +L+ +G+QE+P  YIL RWRKDVKR YV +     VDI NP   ++ L++R +QVV++G +S +  +   +      NK+  V +
Sbjct:  529 FTMEIFRRFQDEVSAMSSCFGVTQVHSNGSASSYVVKER------EGDKVRDFEVIYETSAAAQVRCFCVCGGFSFNGYQCRHVLLLLSHNGLQEVPPQYILQRWRKDVKRLYVAEFGSGRVDIMNPDQWYEHLHRRAMQVVEQGMRSKEHCRAAWEAFRECANKVQFVTE 693          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 60/170 (35.29%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTLDNIL----NKLHLVQD 501
            YT EMF KF  EV    +C   K    DG    + K  F V   E++ R+F V++N+   EV+C C LF  +G+L RH + VL  SG   IPS Y+L RW KD K   V++   + V+      R+ DL  R +++ +E   S + Y   +  L+  L    NK +L+Q+
Sbjct:  395 YTREMFKKFQVEVLGGVACHPKKESEEDG----VNKRTFRVQDYEQN-RSFVVVWNSESSEVVCSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRWTKDAKSREVMESDQTDVE-STKAQRYKDLCLRSLKLSEEASLSEESYNAVVNVLNEALRKWENKSNLIQN 558          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTL 465
            YT+ +F KF  EV  + +C   K    +   T      F V   EKD   F V ++ +  E+ C C +F ++G+L RH L +L   G   IP  YIL RW KD K   +         I+  V R++DL  R  ++ +EG  S + Y + L+TL
Sbjct:  512 YTHTIFKKFQVEVLGVVACHPRKEKEDENMAT------FRVQDCEKDDD-FLVTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAGEGAD--QIQTRVQRYNDLCSRATELSEEGCVSEENYNIALRTL 656          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTLDNIL 477
            YT  +F KF  EV    +CS  +  + D   +    ++FE   N +D   F V +N +  EV C+C LF ++GYL RH L VL    +  IPS YIL RW KD K  +    S     ++  + R++DL +R +++ +E   S + Y +    ++  +
Sbjct:  521 YTPAVFKKFQIEVLGAIACS-PREENRDATCSTFRVQDFE---NNQD---FMVTWNQTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRWTKDAKSRH---FSGEPQQLQTRLLRYNDLCERALKLNEEASLSQESYNIAFLAIEGAI 668          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 50/155 (32.26%), Postives = 72/155 (46.45%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTLD 468
            YT+  F KF  EV  + SC   K    DG       E+FE   N      F V  N   L+  C C LF ++G+L +H + VL  + +  +PS YIL RW K        +  C+ +D  N + R DDL +R V++      S +  K  L+ L+
Sbjct:  456 YTDAAFKKFQAEVPGVVSCQLQKE-REDGTTAIFRIEDFEERQN------FFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSKKGNNKEDKNDKCATID--NRMARFDDLCRRFVKLGVVASLSDEACKTALKLLE 601          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 43/165 (26.06%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTLQTLDNILNKLHLVQ 498
            +T ++F KF  E+   ++ +  + +  DG  +      F V + E D++A+ V +   ++   C C +F   G L RH+L V   + +  +P HYIL RW ++ K    LD   S     + +HR++ L +  ++  +EG  + + Y + L  L     K+ +V+
Sbjct:  481 FTRKIFGKFQEELVETFAHTANR-IEDDGTTS-----TFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSENGHDSSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVR 639          
BLAST of FC870692 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 46/151 (30.46%), Postives = 80/151 (52.98%), Query Frame = 1
Query:    4 YTNEMFSKFHTEVEAMYSCSFTKHVSADGPITYIVKEEFEVGSNEKDSRAFDVLYNASDLEVLCVCGLFNFRGYLSRHILCVLNQSGMQEIPSHYILSRWRKDVKRSYVLDHSCSGVDIKNPVHRHDDLYKRIVQVVKEGRQSHDLYKVTL 456
            Y++E+F +F  EV    +C  TK  S +G  TY VK+ F+      D + + V ++    ++ C C  F ++GYL RH + VL  SG+  IP +Y+L RW    +  + +  +   V  ++ + R +DL +R + + +EG  S + Y V +
Sbjct:  449 YSHEIFRRFQLEVLGAAACHLTKE-SEEGT-TYSVKD-FD------DEQKYLVDWDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNAARNRHQISRNLELV--QSNIRRFNDLCRRAIILGEEGSLSQESYDVAM 588          
The following BLAST results are available for this feature:
BLAST of FC870692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FRS6_ARATH1.187e-3950.59Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis tha... [more]
FRS8_ARATH3.032e-2739.18Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis tha... [more]
FRS1_ARATH2.104e-2035.29Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
FAR1_ARATH1.081e-1633.12Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FHY3_ARATH5.931e-1531.65Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FRS2_ARATH7.746e-1532.26Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
FRS3_ARATH1.461e-1326.06Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FRS4_ARATH7.250e-1330.46Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3DG08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870692 ID=FC870692; Name=FC870692; organism=Citrus clementina; type=EST; length=624bp
GGGTACACAAATGAAATGTTCAGTAAGTTTCATACGGAGGTGGAGGCTAT
GTACTCTTGCTCTTTTACAAAACATGTCAGTGCTGATGGACCTATAACAT
ACATAGTGAAGGAAGAATTTGAGGTTGGTAGCAACGAGAAAGATTCAAGG
GCTTTCGATGTTTTGTACAATGCCTCCGACTTGGAGGTGCTTTGTGTTTG
TGGGTTGTTCAATTTCAGAGGATATTTATCCAGACACATTCTCTGTGTTC
TAAACCAGAGTGGCATGCAGGAGATCCCATCTCACTACATTCTTTCTCGA
TGGAGAAAAGATGTTAAACGCTCTTATGTTCTTGATCACAGCTGCAGTGG
CGTTGATATTAAAAATCCGGTGCACAGGCATGATGATTTGTACAAACGCA
TTGTGCAGGTCGTCAAGGAAGGCAGGCAATCTCATGATCTTTACAAGGTT
ACTTTACAAACTTTGGATAATATATTGAACAAGCTTCATCTTGTACAGGA
TCATCAAGTGTAATTTTTGTAGTTGAGAGCTCTAGATTTTGTAGATTCAG
CTTTAAGCTTCTGTATGACGTATTTGATTTATTGTCATTTGCAGGCTGCA
AATGACAATAAAATATTCTTCATT
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