FC870723

Overview
NameFC870723
Unique NameFC870723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9666 contig Ccv1_Contig9666:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870723 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.181e-26
Identity = 56/86 (65.12%), Postives = 75/86 (87.21%), Query Frame = 3
Query:    3 ENNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 260
            +N + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+SSL NIAGET KKL +LAS + +DIQDR+L
Sbjct:  328 QNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413          
BLAST of FC870723 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 51/86 (59.30%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    3 ENNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 260
            +N   D+D++ +LQKFSGSA+ISS+DLFGH  D++++D+ ASDLINR+SFQAQQD+SS+ N+A ET  KL + ASS+ +D+QDR+L
Sbjct:  317 QNRDADLDSKATLQKFSGSAAISSSDLFGHGPDDSNIDITASDLINRISFQAQQDMSSIANLAEETKNKLGTFASSIFSDLQDRML 402          
BLAST of FC870723 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.204e-20
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 3
Query:    3 ENNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSL 233
            +NNS D++ + SL+KFSGS++ISSADLFG    +  LDL A DL+NRLS QAQQDISSLKN+A ET KKL S+ASSL
Sbjct:  317 DNNSADLEAKSSLKKFSGSSAISSADLFGDGDGDFPLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSL 393          
The following BLAST results are available for this feature:
BLAST of FC870723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD8_ARATH2.181e-2665.12Probable ADP-ribosylation factor GTPase-activating... [more]
AGD9_ARATH7.758e-2459.30Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH5.204e-2066.23ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2BC04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870723 ID=FC870723; Name=FC870723; organism=Citrus clementina; type=EST; length=662bp
GGGAGAACAACTCTATTGACATGGATACTCAAGTTTCTTTGCAAAAGTTC
TCAGGTTCAGCATCGATCTCTAGTGCTGATCTGTTTGGTCATGACTCTGA
CAATGCCTCACTTGATCTTGCTGCTAGTGACCTCATCAACAGACTCTCAT
TCCAGGCACAACAAGATATCTCTTCTCTGAAGAACATTGCGGGAGAGACT
GGAAAGAAACTTAGCTCCTTGGCGTCAAGTCTGATAACAGATATTCAAGA
CAGAATACTCTGAAAATCTTCGAATATGTCTGGAGTTTGTTACATTTACC
AGCCTACATCTTGTGTAGGAAATGTAAAATGAGTTTGATCATAAAATTCT
TTTGGAAGACAAATAAAATTTTAGAATTCTGCTGGCATACTACCGACTGG
GCTTTTTATTGTGGTTTCAGCAGTGTTTGTTTTGAGACTAGTTTCATGTG
CCTTTCATTTAGTGAATCGATTCAATATTATGTACCTTCGTGGCTTCGTT
GTAAACCAAGGAACCTATACAAATATATATAAATATAATATTTGTAGCGC
TGTGGCCAGGGAACTTTGTAAAAGCAGCTTGCTTATTATGTACTTTCTTG
CTTTGCTATATTAGTAAAGTAATTTTGGGCTCGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
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