FC870727

Overview
NameFC870727
Unique NameFC870727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9568 contig Ccv1_Contig9568:736..1436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870727 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.920e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 3
Query:    6 CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 314
            CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV
Sbjct:  227 CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 329          
BLAST of FC870727 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.773e-54
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 3
Query:    6 CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 314
            CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF GDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV
Sbjct:  227 CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 329          
BLAST of FC870727 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 3
Query:    6 CKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASS 287
            CK +++AHFVA DYGHMD+LDD+      + ++   CKNG   +  MR  V GIVVAFLK   +G+  + R I+KDPS +P KLD    ++ +S
Sbjct:  229 CK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLDPSPELEEAS 320          
The following BLAST results are available for this feature:
BLAST of FC870727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CLH1_CITSI1.920e-55100.00Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_CITUN2.773e-5499.03Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_ARATH3.314e-1545.74Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2BC08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870727 ID=FC870727; Name=FC870727; organism=Citrus clementina; type=EST; length=701bp
AGGGATGCAAGAACTCTTCTCGTGCTCATTTTGTTGCTACAGATTATGGT
CACATGGACATTTTGGATGATAATCCATCAGACGTAAAGTCTTGGGCGCT
TTCGAAATACTTTTGCAAAAATGGAAACGAATCGAGGGATCCAATGAGAA
GATGTGTGAGTGGGATTGTGGTGGCGTTTCTGAAGGATTTTTTTTATGGT
GATGCTGAGGATTTTAGGCAAATCCTGAAAGACCCTTCTTTTGCTCCTAT
AAAGCTTGATTCTGTTGAGTACATTGATGCATCAAGCATGCTTACGACAA
CTCATGTAAAAGTTTAACGATCTTAAAATTAATTAAATGTACTTTAATTT
TTTTGCTCCTTTTTTTTTTTCCTAATTTTAAGAATAAAACAGCCAATTTC
ATTTATACTAGAATCACTAGTTATATATATGCAGGTGATGTTGTTCTCTG
TTTGTAACGGAATCCTCTTTGTTACATTACTAATAAATTAGTCGCAGTTA
TGAGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAACTTTGGGCGCCCCCCCGGCCCCTTCAAATTTAAACCCC
AAAAAGTTTTAGGTTGGGGCCCCAATTTGGGCCCCTTTGGCCAATTCCCC
C
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