FC870832

Overview
NameFC870832
Unique NameFC870832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9708 contig Ccv1_Contig9708:1..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC870832 vs. ExPASy Swiss-Prot
Match: NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1 
Query:  100 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDNVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 510
            E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:    6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144
[Close]
BLAST of FC870832 vs. ExPASy Swiss-Prot
Match: NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1 
Query:  100 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDNVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 510
            E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:    6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144
[Close]
BLAST of FC870832 vs. ExPASy Swiss-Prot
Match: NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.132e-21
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1 
Query:  142 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDNVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 510
            +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   20 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144
The following BLAST results are available for this feature:
BLAST of FC870832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUDC2_MOUSE4.695e-2138.57NudC domain-containing protein 2 OS=Mus musculus G... [more]
NUDC2_HUMAN4.695e-2138.57NudC domain-containing protein 2 OS=Homo sapiens G... [more]
NUDC2_RAT6.132e-2140.48NudC domain-containing protein 2 OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2CG12ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870832 ID=FC870832; Name=FC870832; organism=Citrus clementina; type=EST; length=764bp
CGCGCCGGGGATGACAAAGCTAAAACAGAAGTAAAAGAAATTCCAAGAAC
GCTCGAAGAGCAGACAGAGACCCTAGAAATGGCGGAGAAATTGGCGCCCG
AGAAACGGCATCGTTTCCTCCACAACGGCCAAACAGTATTTGAATGGGAT
CAAACCCTAGACGAGATAAATATTTACATAAATTTACCGCCAAATGTTCA
CTCGAAGCAATTTTATTGCAAGATTCAATCAAAACATATTGAACTTGGCA
TCAAAGGCAACCCCCCTTATCTCAATCATGAACTCACCTGTCCGGTGAAG
ACGGATTCTTCTTTCTGGACCTTAGAGGATAATGTGATGCACATAACATT
GACGAAAAGGGATAAGGGTCAGACTTGGGCTTCGCCTATAATGGGTCAGG
GTCAGCTCGACCCTTATGTCACTGATCAAGAACAGAAGCGTCTCATGCTG
CAGAGGTTCCAAGAAGAGAATCCGGGTTTTGACTTCTCGCAGGCACAATT
TACAGGTAGCTGCCCCGACCCAAGGACCTTTATGGGTGGGATCCGCTCTG
ATTGACAATGTTACTATGCTACATTGCTTACTTGTATTAAGTCTGTAGCA
TTATTTACTTGTATTAAGCCTATTAGAATCCTGACACTCTCTCGGTAAAT
AAAAACAATCTGATTTCCGTCAGTGTTCAGGTATTCTATGTAAAACTGTA
TTGACCTTGTCAAATGATTGTGGTCACATGTCACTCTAATTATTGTCCCG
TTTATTCCAAATGT
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