FC870855

Overview
NameFC870855
Unique NameFC870855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10310 contig Ccv1_Contig10310:596..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.423e-79
Identity = 137/166 (82.53%), Postives = 152/166 (91.57%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 499
            QYVAF + LGL LCL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKGKSLTG+L A+DV+GD+ LVGIFYFIGFG FCLE+L+SIWVIQQVYM+FRG GK AEMKREAA GAM AAL
Sbjct:  123 QYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKTAEMKREAALGAMGAAL 288          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 9.222e-79
Identity = 132/166 (79.52%), Postives = 150/166 (90.36%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 499
            QYV FATYLGL LCL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+LHI FC+FA+VAPP++FKGKSL G+LPA+DV+   A+VGIFYFIGF  FCLES+VSIWVIQQVYMYFRGSGK  +M+REAARGA+RAA+
Sbjct:  124 QYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGKQDQMRREAARGALRAAV 289          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.204e-78
Identity = 134/166 (80.72%), Postives = 152/166 (91.57%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 499
            QY+AFATYLGL L L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG YVLWYRPLYRAFR++SA  FGWFFLFY+LHI FC+FA+VAPPI+FKGKSL G+LPA+DV+   ALVGIFYFIGFGLFCLES+VSIWVIQQVYMYFRGSGKA +M+R+AARGAMRAA+
Sbjct:  126 QYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRRDAARGAMRAAI 291          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.020e-77
Identity = 136/166 (81.93%), Postives = 149/166 (89.76%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 499
            QYVAF + LGL +CLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKSLTG+LPA+DV+  + LVGIFYFIGFG FCLESLVSIWVIQQVYMYFRGSGKAAEMK+EA R AM AAL
Sbjct:  117 QYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGKAAEMKQEATRRAMMAAL 282          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.126e-75
Identity = 127/165 (76.97%), Postives = 151/165 (91.52%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 496
            QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+SIWVIQQVYMYFRGSGKAAEMKR+A RGAMRAA
Sbjct:  141 QYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRGAMRAA 305          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.126e-75
Identity = 127/165 (76.97%), Postives = 151/165 (91.52%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 496
            QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+SIWVIQQVYMYFRGSGKAAEMKR+A RGAMRAA
Sbjct:  141 QYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRGAMRAA 305          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.055e-74
Identity = 129/165 (78.18%), Postives = 149/165 (90.30%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 496
            QY+AF+++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKGKSL G+LPA+DV+G  A+VGIFYF+GFGLFCLESL+SI VIQQVYMYFRGSGKAAEMKREAARGA+ +A
Sbjct:  117 QYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSA 281          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.378e-74
Identity = 130/165 (78.79%), Postives = 149/165 (90.30%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 496
            QY+AF++ LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKGKSL G+LPA+DV+G++A+VGIFYFIGFGLFCLESL+S+ VIQQVYMYFRGSGKAAEMKREAARGAMR+A
Sbjct:  121 QYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAARGAMRSA 285          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.426e-71
Identity = 120/165 (72.73%), Postives = 143/165 (86.67%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 496
            QYVAFA+ LGL LCL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGWFFLFYL+HI FC++A+V+P I+F GKSLTG+ PA+ ++G+  +VG+FYF+GF +FCLESL+S+WVIQ+VY+YFRGSGK AEMKREAAR A RAA
Sbjct:  148 QYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGKEAEMKREAARSAARAA 312          
BLAST of FC870855 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.632e-67
Identity = 120/166 (72.29%), Postives = 139/166 (83.73%), Query Frame = 2
Query:    2 QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 499
            QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+ HI FC FA+VAPP+IF+GKSLTG LPA++++  +A VGI YFIG G FC+E+L++IWVIQQVY YFRGSGKAAEMKREA +  +  AL
Sbjct:  118 QYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIGAGFFCIETLLNIWVIQQVYAYFRGSGKAAEMKREATKSTLMRAL 283          
The following BLAST results are available for this feature:
BLAST of FC870855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SCAM_PEA1.423e-7982.53Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH9.222e-7979.52Secretory carrier-associated membrane protein 3 OS... [more]
SCAM5_ARATH1.204e-7880.72Secretory carrier-associated membrane protein 5 OS... [more]
SCAM1_ARATH1.020e-7781.93Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSJ2.126e-7576.97Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI2.126e-7576.97Putative secretory carrier-associated membrane pro... [more]
SCAM3_ORYSJ1.055e-7478.18Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ORYSJ1.378e-7478.79Secretory carrier-associated membrane protein 2 OS... [more]
SCAM4_ORYSJ1.426e-7172.73Secretory carrier-associated membrane protein 4 OS... [more]
SCAM2_ARATH1.632e-6772.29Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1AB07ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870855 ID=FC870855; Name=FC870855; organism=Citrus clementina; type=EST; length=809bp
GCAGTATGTTGCATTTGCAACATATTTAGGATTGTTTTTGTGTCTCCTGT
GGAACATCGTAGCTGTTACCACAGCATGGATCAAAGGCGAAGGTGTAAAA
ATCTGGTTTCTCGCCATTATTTACTTCATAGCAGGAGTTCCAGGAGCTTA
TGTGCTGTGGTATCGTCCACTCTATCGTGCTTTCAGGACTGAAAGTGCAA
TGAAGTTTGGATGGTTTTTCTTGTTTTACTTGCTCCACATTGGCTTTTGC
ATATTTGCCTCAGTTGCTCCTCCAATAATTTTCAAAGGAAAGTCACTCAC
TGGCGTTTTGCCTGCGGTGGATGTTATGGGTGACCATGCACTGGTTGGGA
TATTCTACTTCATTGGATTTGGATTATTCTGCCTGGAATCATTGGTCAGC
ATCTGGGTTATTCAGCAAGTGTACATGTATTTCCGAGGAAGTGGTAAAGC
TGCAGAGATGAAGCGTGAGGCTGCACGAGGGGCTATGAGGGCAGCTTTAT
AATATACTTCAGTAGAGGATAGAACACTGTGATAACCTTCTGTATGATTT
AGGTTGTACATGTACTTAAAGCCATGGAAAATGCTCTCGGAGATGATATG
TTCGGAGACTGGCCTGGCTTAACATCAGTTCTTTTTCTTTTTGACTTATT
TCGAGTGCTCTGTTTTGTATATGTTGGTTACTAGAGAGTATAGGCTTCGC
CTTGTTGAGATTCTCTACAACCATTTCCATGTATGATGAATTCGTTCTGT
GTTGAGTTTATTTCATGATTATTTCTTCCTCAATTTTGAATAAACGATAC
AAATAAAAT
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