FC870884

Overview
NameFC870884
Unique NameFC870884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:442..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 144
            GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:  133 GCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 141
            GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:  121 GCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 141
            GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   60 GCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 141
            GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:  122 GCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 141
            GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF+A KP G
Sbjct:  133 GCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 141
            GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:  121 GCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.493e-15
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 138
            GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   32 GCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 138
            GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  131 GCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 141
            GCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:  133 GCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of FC870884 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 138
            GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  131 GCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of FC870884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBS_LACSA1.546e-1675.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU7.670e-1678.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.308e-1576.60Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_WHEAT2.232e-1574.47Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS_MUSAC2.915e-1576.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_WHEAT2.915e-1574.47Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_SINAL6.493e-1576.09Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1A_ARATH8.481e-1576.09Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS3_AMAHP1.889e-1472.34Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_ARATH1.889e-1476.09Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1AD12ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870884 ID=FC870884; Name=FC870884; organism=Citrus clementina; type=EST; length=394bp
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTC
AAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTT
CCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTAT
GTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTT
AATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCT
CCCCGACTTTGGCTTTTTTTTTTATATATATTTTAATAATTGAATCCTTT
GTTTTCAGTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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