FC870886

Overview
NameFC870886
Unique NameFC870886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3409 contig Ccv1_Contig3409:1571..2205. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.778e-65
Identity = 117/180 (65.00%), Postives = 143/180 (79.44%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG 544
            GLYRYRLGDVVK+  FHNSTPEL+FICRR+L+L+INIDKNTEKDLQL+V+            V+DFTS V+ S+DPG YVIFWE+SG+ +DEVL  C N LD +F+DAGY  +RK+  IGPLELR++ KGTF++ILDH+L LG A+SQFKTPR V P+N  VLQIL  N+ +SYFSTAYG
Sbjct:  401 GLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYVIFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYG 580          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.394e-51
Identity = 100/188 (53.19%), Postives = 134/188 (71.28%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVD-----XXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVSG---EVNDEVLKECCNCLDRSF-VDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 541
            GLYRYRLGDVVKV GFH++TP+L+F+CRR+L+L+IN+DKN+E DLQL+VD                 + D+TSH D S+DPGHYV+FWE++G   E    VL+ CC+ +DR+F  DAGY  +RK  AIG LELRV+ +G FQ++L HY+  G++  QFK PRCV P+N  VL++L +N    +FSTAY
Sbjct:  423 GLYRYRLGDVVKVAGFHHATPKLRFVCRRSLILSINVDKNSEHDLQLAVDSAAKILAGDGENHKQLEIADYTSHADTSSDPGHYVVFWELNGGGEEDGGGVLQRCCDEMDRAFGADAGYAQSRKTCAIGALELRVLRRGAFQEVLRHYVAGGSSAGQFKMPRCVAPSNAGVLRVLKDNTINIFFSTAY 610          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.388e-35
Identity = 72/177 (40.68%), Postives = 116/177 (65.54%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 532
            GLYRYR+GDV++V GF+N  P+ +FICRRN++L+I++DK  E+DL  S+             + ++TS+ D S+ PGHYV+FWE+ G +  ++++ECC  ++   +D  Y   R K  +IG LE+RVV  GTF++++D  +  G + +Q+KTPRCV  +N    ++L  ++  S+FS
Sbjct:  404 GLYRYRIGDVLQVAGFYNGAPQFRFICRRNVVLSIDLDKTNEEDLHRSI-TLAKKKLGSNAFLAEYTSYADTSSVPGHYVLFWEIQGHLEPKLMEECCVAVEEE-LDYIYRQCRTKERSIGALEIRVVKPGTFEKLMDLIISQGGSFNQYKTPRCV-KSNSATFKLLNGHVMASFFS 577          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.185e-34
Identity = 75/183 (40.98%), Postives = 119/183 (65.03%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV------SGEVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 532
            GLYRYR+GD+++V GFHNS P+ KFI R N+LL+I  DK  E DLQ +V+            V+++TS+ D  T PGHYVI+WE+      +   +DEV+ +CC  ++ S ++A Y  +R    +IGPLE+RVV  GTF++++D  +  G++++Q+K PRCV  T   ++++L + +  ++FS
Sbjct:  406 GLYRYRVGDILRVTGFHNSAPQFKFIRRENVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYADTKTIPGHYVIYWELLSRDQSNALPSDEVMAKCCLEMEES-LNAVYRQSRVSDKSIGPLEIRVVQNGTFEELMDFSISRGSSINQYKVPRCVSLT--PIMKLLDSRVVSAHFS 585          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.683e-34
Identity = 71/183 (38.80%), Postives = 115/183 (62.84%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV-----SGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTA 538
            GL RYR+GD+++V GF+NS P+ KF+ R+N+LL+I  DK  E +LQ +V+            V+++TS+ +  T PGHYVI+WE+     +   NDEV+  CC  ++ S       S     +IGPLE+RVV  GTF++++D+ +  GA+++Q+K PRCV  T   ++++L + +  ++FS A
Sbjct:  405 GLNRYRVGDILQVTGFYNSAPQFKFVRRKNVLLSIESDKTDEAELQSAVENASLLLGEQGTRVIEYTSYAETKTIPGHYVIYWELLVKDQTNPPNDEVMARCCLEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFT--PIMELLDSRVVSTHFSPA 585          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 71/191 (37.17%), Postives = 118/191 (61.78%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV-----------SGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV--GPTNKTVLQILCNNIGKSYFSTA 538
            GL RYR+GD+++V GFHN+ P+ +F+ R+N+LL+I+ DK  E +LQ +V+            +V++TS  D +T PGHYV++WE+           + E    V + CC  ++ + ++A Y   R   AIGPLE+RVV  GTF++++D+ +  GA+++Q+K PRCV  GP    ++++L + +   +FS A
Sbjct:  420 GLCRYRVGDILQVTGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQAAVERASALLSPYGASIVEYTSQADATTIPGHYVVYWELMVREGGAWPPPAEEEGRGVFERCCLEMEEA-LNAVYRQGRNGEAIGPLEIRVVRAGTFEEVMDYAISRGASINQYKAPRCVSFGP----IIELLNSRVISKHFSPA 605          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 71/184 (38.59%), Postives = 116/184 (63.04%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVS-------GEVNDEVLKECCNCLDRSFVDAGYVSARKVN-AIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 532
            GLYRYR+GDV++V GF+N  P+ KFICRRN++L+I+ DK  E+DL  SV             ++++TS+ D+ST PGHYV+FWE+          ++ ++L+ CC  ++ S +D  Y   R  + +IGPLE+R+V  G F  ++D  +  G++++Q+KTPRC+   +   L++L + +   +FS
Sbjct:  403 GLYRYRVGDVLQVTGFYNRAPQFKFICRRNVILSIDSDKTNEEDLHNSVTTAKKILENQNYLLLEYTSYTDISTVPGHYVLFWEIKSTHDERPAPLDAQLLESCCAAVEES-LDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMDLLVSHGSSINQYKTPRCI--ESSLALKLLNSKVIACFFS 583          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 68/180 (37.78%), Postives = 111/180 (61.67%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV----SGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 532
            GLYRYR+GDV+ V GF N+ P+  FICR+N++L+I+ DK  E +LQ +V             + ++TS+ D S+ PGHYV+FWE+    +  +   V ++CC  ++ S             +IGPLE+++V  GTF +++D+ + LGA+++Q+KTPRCV      ++++L + +  SYFS
Sbjct:  419 GLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCV--KFAPIIELLNSRVVDSYFS 596          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.191e-32
Identity = 69/182 (37.91%), Postives = 114/182 (62.64%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVD-XXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV-----SGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 532
            GL RYR+GD+++V GFHNS P+  F+ R+N+LL+I+ DK  E +LQ +V+             V ++TS+ D ST PGHYV++WE+     + + + E L  CC  ++ S       S    N++GPLE+RVV  GTF++++D+ +  GA+++Q+K PRCV  T   ++++L + +  ++FS
Sbjct:  398 GLCRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASSILHEECGSRVAEYTSYADTSTIPGHYVLYWELLVRDGARQPSHETLTRCCLGMEESLNSVYRQSRVADNSVGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVNFT--PIVELLDSRVVSAHFS 577          
BLAST of FC870886 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 68/180 (37.78%), Postives = 111/180 (61.67%), Query Frame = 2
Query:    5 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVSGEVN----DEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 532
            GL RYR+GD+++V GF N  P+  FICR+N++L+I+ DK  E +LQ +V             + ++TS+ D S+ PGHYV+FWE+  + N      V ++CC  ++ SF            +IGPLE+++V  GTF +++D+ + LGA+++Q+KTPRCV      ++++L + +  SYFS
Sbjct:  419 GLCRYRVGDLLRVTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLDGNTPIPPSVFEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCV--KFAPIIELLNSRVVDSYFS 596          
The following BLAST results are available for this feature:
BLAST of FC870886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GH35_ORYSJ3.778e-6565.00Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ1.394e-5153.19Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ARATH2.388e-3540.68Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ARATH1.185e-3440.98Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH33_ARATH7.683e-3438.80Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH32_ORYSJ1.892e-3237.17Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH311_ORYSJ2.472e-3238.59Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH3.228e-3237.78Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH31_ARATH7.191e-3237.91Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ARATH9.392e-3237.78Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DB03ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870886 ID=FC870886; Name=FC870886; organism=Citrus clementina; type=EST; length=635bp
GGGAGGTTTGTATCGGTACCGGCTAGGGGATGTGGTGAAGGTTATGGGCT
TCCATAATTCAACCCCAGAACTCAAATTTATTTGCAGGAGGAACCTATTG
CTAACCATAAACATTGACAAGAACACTGAGAAGGATTTGCAGCTATCTGT
CGACGAAGCTGCCCAGCTTTTAGCTGAAGAAAAACAAGAAGTAGTTGACT
TTACGAGTCATGTTGATTTGTCAACAGATCCTGGTCACTATGTGATCTTC
TGGGAAGTCAGTGGTGAAGTCAATGACGAGGTCTTGAAAGAATGCTGCAA
TTGTTTGGATCGTTCCTTTGTCGACGCAGGTTATGTCAGTGCACGCAAGG
TCAATGCCATAGGGCCGCTCGAACTCCGAGTTGTTTTGAAGGGCACCTTC
CAACAGATTTTAGATCATTACCTTGGATTGGGAGCTGCTCTTAGTCAGTT
TAAAACCCCTAGGTGCGTTGGACCTACCAACAAGACTGTGTTGCAAATCT
TATGTAATAACATTGGTAAGAGCTACTTTAGTACTGCTTACGGGTAATTG
TAAGAAACTTGCAAATCTGATCATCTTTTTATAGGTATTGAAATCTTTTC
TGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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