FC870893

Overview
NameFC870893
Unique NameFC870893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9729 contig Ccv1_Contig9729:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870893 vs. ExPASy Swiss-Prot
Match: UCKC_DICDI (Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.250e-43
Identity = 99/270 (36.67%), Postives = 159/270 (58.89%), Query Frame = 3
Query:    6 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRVGC--FMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDIL-KILDPAKFCSSAQNFTDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGVDKEAVAAAGSTLKLDGS 806
            T +P++D     R  +K ++  E   V++ EG+YALH EIR  LDL +++ GGVH  LI R+ RD  R G     S   I  TV+PM++  IEP L  A +++ N F+P     + +++LKS KQ    D++  +L+ +    +   + D+YL +P   T    +  D IRVR  +G+++++  E ++EG FII P+VDF + ++ + GL++LGYQ VA I   + I++DGKI+I  D L++    ++QIKG D  +V  AG  L L+ +
Sbjct:  122 TDLPLYDFTKSGRYAYKRVQPPES-KVLLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQPHESLQQITDTVYPMYKAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIHSVLNKSTIQENTARYYDIYL-IPPNTTFANSSSCDWIRVRNADGQYSIMFSEEIKEGPFIISPRVDFVVGVNMLGGLMSLGYQMVAIIHRKSTIFKDGKIIISYDELEELGQTFVQIKGFDATSVQEAGKKLGLENN 389          
BLAST of FC870893 vs. ExPASy Swiss-Prot
Match: UCKD_DICDI (Uridine-cytidine kinase D OS=Dictyostelium discoideum GN=udkD PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.640e-27
Identity = 79/248 (31.85%), Postives = 129/248 (52.02%), Query Frame = 3
Query:   84 VIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRVGCFMSQN---DIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFTDMYLRLP--GIPTNGQLTESDCIRVRICE-GRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQD-GKILIEVDHLQDAPSPYLQIKGVDKEAVAAAGSTLKLDGS 806
            VII EG YAL   IR  LD+ +A+ GGVH  LI  + R     G   S++    I   VFPMF+  +EP L  A +KI + F+P+      ++V K+      Q   + L         +NF+DMYL  P  G+    Q  + + IR+R  E G+F +     + +G    +P ++F+IS+ T+ GLL+LGYQ  A +  +  ++ D   ++I  +++++    ++QIKG  +  V  +   LK+ G+
Sbjct:  201 VIILEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQITNVVFPMFKAFVEPDLDQAKIKIHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNVVPVKKNFSDMYLYPPKYGVDGISQADKRNWIRIRRSEHGQFNITFYNEMMDGAVNTRPSLNFEISVKTLGGLLSLGYQIGAILNRTVEVWYDKNGVVITKEYIKELEKHFIQIKGHSRREVLDSAEKLKITGN 448          
The following BLAST results are available for this feature:
BLAST of FC870893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UCKC_DICDI1.250e-4336.67Uridine-cytidine kinase C OS=Dictyostelium discoid... [more]
UCKD_DICDI1.640e-2731.85Uridine-cytidine kinase D OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2DB11ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870893 ID=FC870893; Name=FC870893; organism=Citrus clementina; type=EST; length=808bp
GGGGAACAAAAGTGCCCATATTTGACTTGGAGACTGGTGCTAGAAGTGGC
TTCAAGGAGCTTGAAGTCTCTGAAGATTGTGGTGTGATAATATTTGAAGG
GGTTTATGCCTTGCATCCTGAAATCCGAAAATCACTTGACTTGTGGATAG
CTGTGGTTGGTGGTGTTCATTCTCATTTGATTTCTCGAGTTCAACGGGAC
AAAAGTAGAGTGGGATGTTTTATGTCCCAAAATGATATCATGATGACTGT
GTTTCCAATGTTCCAGCAGCATATTGAACCTCATCTTGTTCATGCACATC
TGAAAATCCGAAATGACTTTGATCCTGTGCTTTCCCCTGAGAGTTCATTG
TTTGTCTTAAAAAGCAACAAGCAAGTGGCTTATCAAGATATTTTAAAAAT
CCTTGACCCTGCAAAGTTCTGCAGTTCTGCACAGAATTTCACTGATATGT
ATCTAAGGCTTCCTGGAATTCCTACAAATGGGCAATTGACGGAGAGCGAC
TGCATTCGTGTCAGAATATGTGAAGGCAGATTTGCGTTGCTGATACGAGA
GCCACTAAGAGAAGGGAATTTCATCATTCAACCGAAAGTGGATTTTGATA
TTAGCATTAGTACTGTTGCTGGCCTCCTTAACCTTGGGTACCAAGCCGTA
GCTTATATTGAAGCATCTGCTTTTATCTACCAAGATGGAAAGATTCTTAT
AGAGGTAGACCATCTGCAAGATGCCCCTAGTCCATATTTACAGATCAAAG
GGGTCGACAAAGAAGCTGTGGCAGCTGCTGGTTCGACTCTTAAATTGGAT
GGTTCATA
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