FC870922

Overview
NameFC870922
Unique NameFC870922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig306 contig Ccv1_Contig306:387..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.502e-35
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTPSTVEQEMAEVAGA 295
            LKG RFSVGSGSPYAYGVLD+GYK+DM++          IYHAT+RD ASGGV SVY+VGP+GWKK++GDDVG+LH  YYPV P+TVEQEM EV GA
Sbjct:  176 LKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.563e-35
Identity = 70/93 (75.27%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTPSTVEQEMAE 283
            LKG RFSVGSGSPYAYGVLDSGYK+DMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELH HYYPV P+T EQ M E
Sbjct:  178 LKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEE 270          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.347e-35
Identity = 71/95 (74.74%), Postives = 73/95 (76.84%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTPSTVEQEMAEVA 289
            LKG RFSVGSGSPYAYGVLDSGYKFDMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELH HYYPV P T E  M E A
Sbjct:  178 LKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAPITAEHVMEEAA 272          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTP 256
            L G RFS GSGS YAYGVLD+G+K+DM+           +YHAT RDA SGG  +VY+V  +GWKK+S DD  +L+  YY + P
Sbjct:  183 LHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLYQKYYNIVP 266          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.110e-17
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVT 253
            + GT FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH+ Y  V+
Sbjct:  180 ISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVS 262          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.011e-17
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTP 256
            + G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:  180 ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.011e-17
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTP 256
            + G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:  180 ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHYYPVTP 256
            + GT FSVGSGS YA+GV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH+ Y    P
Sbjct:  180 ISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYTSSIP 263          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHY 241
            + G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  S+Y+V  +GW ++S D+V +LH+ Y
Sbjct:  180 ISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLHDKY 258          
BLAST of FC870922 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    5 LKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHNHY 241
            + G  F+VGSGS YAYGVLD G + DM+           I+ A  RDA SGG  +VY+VGP GW+++S  DV  LH+ Y
Sbjct:  176 IPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAGLHDGY 254          
The following BLAST results are available for this feature:
BLAST of FC870922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSB5_SPIOL1.502e-3570.10Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5A_ARATH2.563e-3575.27Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5B_ARATH3.347e-3574.74Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5_DICDI4.392e-1952.38Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_MOUSE4.110e-1746.99Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_PONAB7.011e-1746.43Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_HUMAN7.011e-1746.43Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_RAT1.562e-1645.24Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_BOVIN2.040e-1648.10Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_CHICK1.909e-1448.10Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1AF12ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870922 ID=FC870922; Name=FC870922; organism=Citrus clementina; type=EST; length=578bp
GGGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATATGCTT
ATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCT
GCGGAGTTGGCTAGAAGAGCTATTTATCATGCAACATTCAGAGATGCAGC
CAGTGGTGGTGTTGCAAGCGTTTATTATGTGGGACCAAATGGATGGAAGA
AGCTGTCTGGTGATGATGTTGGAGAGCTTCACAACCATTATTATCCAGTC
ACGCCCAGTACGGTGGAGCAAGAAATGGCTGAAGTCGCAGGGGCATAATT
GAGTCTTGCTCAATTTGGACCAGGTTTGAGATATTCCTCATATTCACAGA
TCCAGTGGAGGACTTTACGGATTTGCTTCTGAACTTTGTCAATGTACCTT
GGGTTGATCCCGGCGATGACTTGTGAATTCAACCTAGTTAAGTTGATGCT
TTAAGAACCCTGCATTTTCTTTTGGTATTTTCATTATGACAAGTACAGTT
CTATTTTCTATTAAGCATTTTGTTATAGTAATTTAGTTCCTGAGATTACA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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