FC870938

Overview
NameFC870938
Unique NameFC870938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9741 contig Ccv1_Contig9741:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: CNX1_ARATH (Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 4.221e-75
Identity = 137/173 (79.19%), Postives = 157/173 (90.75%), Query Frame = 1
Query:    4 SSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHVPHSQA-VPVDTWEHSYKMSSGGG---TEPSCSCSH 510
            SSEKLGGAKVVAT VVPD+V +IK++L++WSD+D+MDLILTLGGTGFTPRDVTPEATK++IERETPGLL+VMM ESLK+TPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHP+H+PH++A +P DTW+ SYK +   G    E  CSC+H
Sbjct:  498 SSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPKHIPHAEATLPTDTWDQSYKSAYETGEKKEEAGCSCTH 670          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: GEPH_MOUSE (Gephyrin OS=Mus musculus GN=Gphn PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.844e-32
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   22 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIK 384
            G  + A  +VPD++ +IKE L  W D  +++LILT GGTGF PRDVTPEATKE+IERE PG+   M+  SL VTP  MLSR   GIRG TLIIN+PG+     EC + +LPAL HA+  ++
Sbjct:   50 GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLR 170          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: GEPH_HUMAN (Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.844e-32
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   22 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIK 384
            G  + A  +VPD++ +IKE L  W D  +++LILT GGTGF PRDVTPEATKE+IERE PG+   M+  SL VTP  MLSR   GIRG TLIIN+PG+     EC + +LPAL HA+  ++
Sbjct:   50 GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLR 170          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: GEPH_CHICK (Gephyrin OS=Gallus gallus GN=GPHN PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.844e-32
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   22 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIK 384
            G  + A  +VPD++ +IKE L  W D  +++LILT GGTGF PRDVTPEATKE+IERE PG+   M+  SL VTP  MLSR   GIRG TLIIN+PG+     EC + +LPAL HA+  ++
Sbjct:   50 GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLR 170          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: GEPH_RAT (Gephyrin OS=Rattus norvegicus GN=Gphn PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 5.972e-29
Identity = 66/134 (49.25%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   22 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPE-------------ATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIK 384
            G  + A  +VPD++ +IKE L  W D  +++LILT GGTGF PRDVTPE             ATKE+IERE PG+   M+  SL VTP  MLSR   GIRG TLIIN+PG+     EC + +LPAL HA+  ++
Sbjct:   50 GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEKFPTFPFCGLQKGATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLR 183          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: CIN_DROME (Molybdenum cofactor synthesis protein cinnamon OS=Drosophila melanogaster GN=cin PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   34 VATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGD 390
            V  ++VPD+   I++ LR+W D +++ +ILT GGTGF PRDVTPEAT++L+E+E P L   +  ES+K T +A LSR   GI G+TLI+N+PG+  AV EC + +   L HA+  I  D
Sbjct:   41 VIGNIVPDEKDIIQQELRKWIDREELRVILTTGGTGFAPRDVTPEATRQLLEKECPQLSMYITLESIKQTQYAALSRGLCGIAGNTLILNLPGSEKAVKECFQTISALLPHAVHLIGDD 159          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: GEPH_DICDI (Gephyrin OS=Dictyostelium discoideum GN=gphn PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.348e-25
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   46 VVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHP 408
            VVPD++  I++++ +W+ + K  LILT GGTGFTPRDVTPEA K L+ R T G+   M+  SL +TP AMLSR  AGIR  TLII +PG+  A+ E +  +LPA+ HA+  I    +   P
Sbjct:   82 VVPDEIEHIQQMITQWTHL-KYKLILTTGGTGFTPRDVTPEAIKPLLNRRTKGIEIAMLKTSLDITPHAMLSRPIAGIRDQTLIITLPGSVKAIRENLGVVLPAIPHAIGLINSKPKSSLP 201          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: MOG_HELPJ (Molybdopterin biosynthesis mog protein OS=Helicobacter pylori J99 GN=mog PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 50/125 (40.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   43 DVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHV 417
            ++V D+   I++ L +  D  + DL++T GGTG   RD+TPEATK++ ++  PG   +M   SLK  P A+LSR +AGIR  +LIIN+PG P ++ EC+EA+ PA+ + +  I G+  + + +++
Sbjct:   45 EIVADERDLIEKSLIKMCDEYQCDLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNI 169          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: MOG_HELPY (Molybdopterin biosynthesis mog protein OS=Helicobacter pylori GN=mog PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.021e-20
Identity = 49/125 (39.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   43 DVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHV 417
            ++V D+   I++ L +  D  + DL++T GGTG   RD+TPEAT+++ ++  PG   +M   SLK  P A+LSR +AGIR  +LIIN+PG P ++ EC+EA+ PA+ + +  I G+  + + +++
Sbjct:   45 EIVADERDLIEKSLIKMCDEYQCDLVVTTGGTGPALRDITPEATEKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNI 169          
BLAST of FC870938 vs. ExPASy Swiss-Prot
Match: MOG_HAEIN (Molybdopterin biosynthesis mog protein OS=Haemophilus influenzae GN=mog PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   40 TDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMHESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 348
            T ++PD+   I++ L+   D     L+LT GGTG   RDVTP+AT  + +RE PG    M   SL   P A+LSR    IR  +LI+N+PG P A+ E +E +
Sbjct:   45 TRLIPDEQPVIEQTLKELVDEQGCHLVLTTGGTGPAKRDVTPDATLAVADREMPGFGEQMRQVSLHFVPTAILSRQVGVIRKESLILNLPGQPKAIKETLEGV 147          
The following BLAST results are available for this feature:
BLAST of FC870938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNX1_ARATH4.221e-7579.19Molybdopterin biosynthesis protein CNX1 OS=Arabido... [more]
GEPH_MOUSE9.844e-3254.55Gephyrin OS=Mus musculus GN=Gphn PE=1 SV=1[more]
GEPH_HUMAN9.844e-3254.55Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1[more]
GEPH_CHICK9.844e-3254.55Gephyrin OS=Gallus gallus GN=GPHN PE=1 SV=1[more]
GEPH_RAT5.972e-2949.25Gephyrin OS=Rattus norvegicus GN=Gphn PE=1 SV=3[more]
CIN_DROME1.798e-2547.90Molybdenum cofactor synthesis protein cinnamon OS=... [more]
GEPH_DICDI2.348e-2548.76Gephyrin OS=Dictyostelium discoideum GN=gphn PE=3 ... [more]
MOG_HELPJ3.509e-2140.00Molybdopterin biosynthesis mog protein OS=Helicoba... [more]
MOG_HELPY1.021e-2039.20Molybdopterin biosynthesis mog protein OS=Helicoba... [more]
MOG_HAEIN6.410e-1541.75Molybdopterin biosynthesis mog protein OS=Haemophi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1AG10ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870938 ID=FC870938; Name=FC870938; organism=Citrus clementina; type=EST; length=890bp
GGGTCTTCAGAGAAGTTAGGTGGAGCAAAGGTGGTTGCAACGGATGTCGT
TCCAGATGATGTGGGAAAAATCAAAGAAGTTCTCCGTAGATGGTCTGATA
TTGACAAAATGGATCTTATCCTTACCCTTGGTGGGACTGGCTTCACCCCA
AGAGATGTAACCCCTGAAGCTACAAAAGAATTGATTGAGAGGGAAACACC
TGGTCTTCTGTATGTCATGATGCATGAGAGTTTGAAGGTGACACCATTTG
CTATGCTCTCGCGTTCTGCAGCGGGGATCAGAGGGTCAACACTGATCATC
AACATGCCTGGGAATCCAAATGCAGTTGCCGAATGCATGGAGGCTTTGCT
GCCTGCCCTTAAGCATGCATTGAAGCAGATAAAGGGGGACAAGAGAGAGA
AGCATCCTCGCCATGTCCCTCACTCACAAGCAGTGCCTGTGGATACATGG
GAGCACAGTTACAAGATGTCCTCTGGTGGTGGCACAGAACCCAGTTGTTC
TTGTTCCCACTAAAATATGTTGGGTAGAAGAAACTATGTAATTTTATGTA
TAATCTGGAGAGCTACTTCTGCATCTGTTTGTAAGGTTTCGACGGTTTTC
TTTCTTTATGGTGCTCAGAACTTGGCAATTGTGCTAAGTGGCAGCATGGT
ACAGCAAAGAAATTGTGAGTTCACATCACTGCAGATTCTTAGTATGGTGA
CTGAGCAGCTGCTTCATGAAAATAATGATGTGGTCTCATTATCATAGATG
AAATACTGGAGCAGGATGTTCATTTATAATATAAAATGGGAGCAAATTGA
GTAGAAGTTGTCACTCTCATGGCTTAAAGGGAGGGAGATTTCCATGAAGG
AATGAAGAGAGCAAAGAGAGTGCACATTTCTGTTGGGTAA
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