FC870940

Overview
NameFC870940
Unique NameFC870940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9742 contig Ccv1_Contig9742:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.229e-65
Identity = 122/196 (62.24%), Postives = 149/196 (76.02%), Query Frame = 1
Query:   91 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL--XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPP 672
            QS+FDRLL  EH RK+AE  YA++PLDADNLTRWG ALLELSQF+ V++SK++I++A SK EEAL ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+KSLEV+ KAPELHME+H+HG  QQT+                   DLKYDIFGWVILAVGIVAWVG A S +PPPP
Sbjct:    4 QSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNMPPPP 199          
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.439e-53
Identity = 106/210 (50.48%), Postives = 136/210 (64.76%), Query Frame = 1
Query:   79 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL----------XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 678
            MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N+ Y+KSL+ S KAPELHM+    G+ QQ L                           +  YD+ GW+ILA GIVAWVGMA S  PPPPAR
Sbjct:    1 MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKSLGPPPPAR 210          
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.714e-52
Identity = 102/200 (51.00%), Postives = 135/200 (67.50%), Query Frame = 1
Query:   88 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL---XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 678
            ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y KSLE++ KAP+LH E +K G+  Q +                    D KYD  GWVILA+G+VAW+  A + +P  P R
Sbjct:    3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPPR 202          
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.434e-47
Identity = 95/197 (48.22%), Postives = 126/197 (63.96%), Query Frame = 1
Query:   88 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 678
            + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                  D  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    5 AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 201          
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.476e-46
Identity = 95/198 (47.98%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   88 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT-LXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 678
            + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                   D  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    5 AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 202          
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.482e-45
Identity = 96/191 (50.26%), Postives = 127/191 (66.49%), Query Frame = 1
Query:   91 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIP 663
            Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K  EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+KSL +++KAPELH                              + KYD+FGWVILA  +VAW+  ANS+ P
Sbjct:    4 QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHTG---------GTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANSQTP 183          
BLAST of FC870940 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.224e-36
Identity = 85/187 (45.45%), Postives = 114/187 (60.96%), Query Frame = 1
Query:  103 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT--LXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSR 657
            D+L   E  RK AE  Y  +P DADNL RWGEALLELSQF++V DS K+I +AISK E+A++IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSLE++ KAP+LH   HK+ +      +                 D KY + GWVILA+G+VA +     R
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRKLR 188          
The following BLAST results are available for this feature:
BLAST of FC870940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU6.229e-6562.24Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO202_ARATH1.439e-5350.48Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO203_ARATH2.714e-5251.00Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TOM20_ORYSI3.434e-4748.22Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSJ6.476e-4647.98Probable mitochondrial import receptor subunit TOM... [more]
TO204_ARATH5.482e-4550.26Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO201_ARATH1.224e-3645.45Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2DE01ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870940 ID=FC870940; Name=FC870940; organism=Citrus clementina; type=EST; length=846bp
GGGGGCCGCCCATATAATAGCGAACTCGGAGGTTTTAAGTTTCAGCAAAA
ACTGCCGCCTGCACTTGAATCCTCAGTCATGGAATTCTCACAAAGCGATT
TCGATCGGCTCTTGTTGTCCGAACACAATCGTAAAACAGCTGAAGCTAAT
TACGCCAAAGACCCTCTCGATGCTGACAATCTCACAAGGTGGGGAGAAGC
ATTGCTTGAATTGTCTCAATTTGAAAGTGTCTCTGACTCCAAGAAGATAA
TAAATGAAGCCATTTCAAAATTTGAGGAGGCTTTAGTGATAGATCCTGCA
AAGCATTATACTTTATGGAGTCTCGGAAATGCTCACACCTCTTGTGGATT
TTTGACTGCCGATCTCTCTGAGGCAAAAGGTGATTTTGATAAGGCGTCAG
AGTGTTTCCAGAGAGCAGTAGATGAGGAACCAACTAATGAGCTCTATCAG
AAATCTTTAGAAGTCAGTACTAAGGCACCGGAACTGCACATGGAGCTCCA
TAAACATGGAATTAATCAGCAGACTCTCGGTGGAGGATCTTCTGCTTCTA
ATGCACAGAGTTCCAAGAAGAAGAGCAGTGATCTAAAGTACGATATATTT
GGATGGGTAATCCTTGCTGTTGGAATTGTTGCATGGGTTGGAATGGCAAA
CTCCCGCATTCCACCACCTCCTGCAAGATAGGCTTTACATATGCTCGTTC
TTTGAGATAACCATGTTGGGGCATTTTAGCAAAGGATTTTCCGAGGATGA
GATCAGTTTTGTGGACTAGTGCATGTGTTATGCTACCATATGTTGATTTT
ACCCCCCAATGTTTTCCATCAGTCATTTAAGTAGGAATATTACTTT
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