FC870980

Overview
NameFC870980
Unique NameFC870980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9367 contig Ccv1_Contig9367:363..1162. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC870980 vs. ExPASy Swiss-Prot
Match: Y2992_ARATH (Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 77/207 (37.20%), Postives = 114/207 (55.07%), Query Frame = 1 
Query:  178 MSAYAHQMXXXXXXXXXXXXXXXXHGSQYTVESGFYMTTFAAVIFXXXXXXXXXXXXXXXXXXAVMLQSCQNRSSGVVELTKSSGDNNYCKLFALHAELNSLEADN-LPKICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVHGYIECIEEAKHLKHMFTLKLFMKLQFKGW 795
            MSAY H M                 GS+Y++ESG YMT+ AA IF                  + MLQSC+NR+  +VE  +      YCK+ +LH++LNSL+ ++ LP +CR +A+  IK+G + R+LN +IQ+  +YF T+ P  +  DVV++DIDD        +NLL        Y++ IEEAKH K +  L L+ KL+ +G+
Sbjct:    1 MSAYTHPMERELSGLSSRGNSEL--GSRYSIESGCYMTSLAASIFIASLVTFGVLMITLLIALSTMLQSCENRNIAIVEAQRLDESFGYCKILSLHSQLNSLDEESELPLLCRDVALHRIKQGIYLRELNFTIQMALTYFQTIKPMNDNCDVVVIDIDD--------TNLL---EQDSYYMKYIEEAKHQKSILILALYSKLRSQGY 194
The following BLAST results are available for this feature:
BLAST of FC870980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2992_ARATH6.571e-2937.20Uncharacterized protein At2g39920 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2DG10ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870980 ID=FC870980; Name=FC870980; organism=Citrus clementina; type=EST; length=800bp
GGGTAACTTACTTTTCTGTAGGTTTAATAATGATCGGCAAAAGAAGCTGA
GATGAGATGCTGTTGTTGGCTCGTAGCATGGTAGATGAATGTTATTGTGA
CCCTTCTATCACCCAAAGGGATCTTTAGATATCCTAGCTTTTAACTTGAG
CTGGTGAATGCTGGTTAAATTACCAAAATGTCAGCTTACGCTCATCAAAT
GGAGCGGCAGCTCTCCTCCCAGAGTCTCTCGAGTAGAGGAGGCTCTGAGC
ATGGAAGCCAATATACGGTTGAGTCCGGGTTCTACATGACAACTTTTGCT
GCAGTAATCTTCATTGGTGGTCTTATAACAGTTGGAGTTCTGTTAATAAC
CTTGCTGGTTACATTGGCTGTCATGTTGCAATCCTGTCAAAATAGGAGTT
CAGGAGTTGTTGAACTTACGAAATCAAGCGGTGATAACAATTATTGCAAG
CTATTTGCTCTACATGCCGAGCTTAACAGCTTGGAAGCAGATAACTTGCC
AAAAATTTGCAGGGGTCTTGCTATTCGATACATCAAAGAAGGACAATTTG
CTAGAGATCTAAACCTTTCAATACAGATTGTTGAAAGCTACTTTAATACT
CTTACACCATCATACAATGGTCTAGATGTAGTTTTAATGGACATAGATGA
TATTTTCGCTTCAAGTTCCAAGTACAGTAATCTATTAATAGACAGAGTTA
ATGTACATGGGTATATTGAGTGCATTGAAGAGGCCAAACATCTGAAGCAC
ATGTTTACATTGAAACTATTCATGAAACTTCAATTCAAGGGATGGCCTGT
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