FC870983

Overview
NameFC870983
Unique NameFC870983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9756 contig Ccv1_Contig9756:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870983 vs. ExPASy Swiss-Prot
Match: P2C55_ARATH (Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.461e-36
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 3
Query:    3 VIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYI 245
            +IAGTDGLFDNLYNNEITA+VVHA+RA + PQVTAQKIAALARQRAQDK+RQTPFSTAAQDAGFRYYGGKLDDITVVVSY+
Sbjct:  378 IIAGTDGLFDNLYNNEITAIVVHAVRANIDPQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGFRYYGGKLDDITVVVSYV 458          
BLAST of FC870983 vs. ExPASy Swiss-Prot
Match: P2C80_ARATH (Probable protein phosphatase 2C 80 OS=Arabidopsis thaliana GN=At5g66720 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.409e-29
Identity = 61/83 (73.49%), Postives = 74/83 (89.16%), Query Frame = 3
Query:    3 VIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITN 251
            ++AGTDG++DNLYN EIT VVV ++RAGL P+ TAQKIA LARQRA DK RQ+PF+TAAQ+AG+RYYGGKLDDIT VVSY+T+
Sbjct:  331 IVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQKIAELARQRAVDKKRQSPFATAAQEAGYRYYGGKLDDITAVVSYVTS 413          
BLAST of FC870983 vs. ExPASy Swiss-Prot
Match: P2C62_ARATH (Probable protein phosphatase 2C 62 OS=Arabidopsis thaliana GN=At4g33500 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 3
Query:    3 VIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFR-YYGGKLDDITVVVSYI 245
            VIA TDGLFDNLY  EI ++V  +++  L PQ  A+ +AA A++  + K  +TPF+ AA++ G+  + GGKLD +TV++S++
Sbjct:  638 VIAATDGLFDNLYEKEIVSIVCGSLKQSLEPQKIAELVAAKAQEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVIISFV 719          
BLAST of FC870983 vs. ExPASy Swiss-Prot
Match: BIP2C_ORYSJ (Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. japonica GN=BIPP2C1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 VIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYITNCE 257
            ++  TDGLFDN+Y  EI AV+  ++ AGL P   A+ + A A++  +    ++PFS AA   G+  Y GGKLDD+TVVVS +   E
Sbjct:  483 IVTATDGLFDNVYEEEIAAVISKSLEAGLKPSEIAEFLVARAKEVGRSATCRSPFSDAALAVGYLGYSGGKLDDVTVVVSVVRKSE 568          
BLAST of FC870983 vs. ExPASy Swiss-Prot
Match: BIP2C_ORYSI (Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. indica GN=BIPP2C1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 VIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYITNCE 257
            ++  TDGLFDN+Y  EI AV+  ++ AGL P   A+ + A A++  +    ++PFS AA   G+  Y GGKLDD+TVVVS +   E
Sbjct:  483 IVTATDGLFDNVYEEEIAAVISKSLEAGLKPSEIAEFLVARAKEVGRSATCRSPFSDAALAVGYLGYSGGKLDDVTVVVSVVRKSE 568          
BLAST of FC870983 vs. ExPASy Swiss-Prot
Match: P2C71_ORYSJ (Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3
Query:    3 VIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYITNCE 257
            ++  +DGLFDN+Y  E+  +V  +++A L P   A+ +AA A++  +     TPFS AA   G+  + GGKLDDI VVVS +   E
Sbjct:  379 IVTASDGLFDNVYEQEVATMVSKSLQADLKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGKLDDIAVVVSIVRKSE 464          
The following BLAST results are available for this feature:
BLAST of FC870983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2C55_ARATH3.461e-3690.12Probable protein phosphatase 2C 55 OS=Arabidopsis ... [more]
P2C80_ARATH1.409e-2973.49Probable protein phosphatase 2C 80 OS=Arabidopsis ... [more]
P2C62_ARATH2.851e-1445.12Probable protein phosphatase 2C 62 OS=Arabidopsis ... [more]
BIP2C_ORYSJ5.377e-1344.19Probable protein phosphatase 2C BIPP2C1 OS=Oryza s... [more]
BIP2C_ORYSI5.377e-1344.19Probable protein phosphatase 2C BIPP2C1 OS=Oryza s... [more]
P2C71_ORYSJ6.573e-1140.70Probable protein phosphatase 2C 71 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2DH02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870983 ID=FC870983; Name=FC870983; organism=Citrus clementina; type=EST; length=617bp
GGGTAATTGCTGGCACTGATGGGCTGTTTGATAATTTGTATAACAATGAG
ATTACTGCAGTGGTAGTCCATGCTATGAGAGCTGGCTTAGGGCCTCAGGT
TACAGCTCAGAAGATAGCAGCCTTGGCACGCCAACGAGCACAGGATAAAG
ACCGGCAGACACCTTTTTCCACTGCTGCTCAAGATGCTGGGTTCCGCTAC
TATGGTGGCAAGCTGGACGACATCACAGTTGTTGTCTCGTACATTACTAA
TTGTGAAGATGTATGTTCCTTGTTCTTTATACCTGTCATATGATTTCGTT
GTTTTATTGCTTTGGCAAATCAAACTTTAGATCAGTTTATGTCCTTGTGA
TCTCTCTCCTGCCTAGCCTGTCTTAGTGCACATTCTATTTTGCATGCTAC
AAATGCTCTATAATTGACAGTAGGAGTCCACTTTGGTTCTTGGTTCTGTC
TTCTTAACGGATCAACAAGCCACCAAATCGGCAATGTATGAAGATTGAAT
TTTAGGCGGTCTATATAACCTCTGTATGTAGCATGGAGTTATAAATGTCA
AACTGATTTCGTAACATTCATCTATTATTGTTATACAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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