FC871032

Overview
NameFC871032
Unique NameFC871032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:282..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.637e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.637e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.103e-43
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.959e-42
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.607e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.607e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.607e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    4 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            SVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   65 SVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.253e-35
Identity = 76/86 (88.37%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            V G+KILRILKA GLAP IPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK  K LPPVWKYES TAS LVA
Sbjct:   66 VAGNKILRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYESATASALVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1
Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151          
BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_SCHPO (40S ribosomal protein S13 OS=Schizosaccharomyces pombe GN=rps13 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 1
Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            +TG KI+RILKA+GLAPE+PEDLY+LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+K   LPP WKYES TAS LVA
Sbjct:   66 ITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151          
The following BLAST results are available for this feature:
BLAST of FC871032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RS132_ARATH3.637e-43100.0040S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH3.637e-43100.0040S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_SOYBN8.103e-4398.8540S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_PEA8.959e-4297.7040S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS13_MAIZE2.607e-4196.5540S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS132_ORYSJ2.607e-4196.5540S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ2.607e-4196.5540S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_LUMRU1.253e-3588.3740S ribosomal protein S13 OS=Lumbricus rubellus GN... [more]
RS13_XENLA2.137e-3582.5640S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_SCHPO2.137e-3581.4040S ribosomal protein S13 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AA09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871032 ID=FC871032; Name=FC871032; organism=Citrus clementina; type=EST; length=529bp
GGGAGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCT
TGCTCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCG
CTATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTT
AGGTTGATCTTGGTTGAGAGCAGAATCCACAGACTGGCTCGCTACTACAA
GAAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCA
GCACTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTC
CAGGATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGT
TATTCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAG
GGCGGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCT
GGATCCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTTAGAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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