FC871041

Overview
NameFC871041
Unique NameFC871041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length843
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9774 contig Ccv1_Contig9774:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.900e-46
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 2
Query:   53 GSCALQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 469
            G    QL+ +DL GL GIT+ G   L++S    LVK+N SGC NLTD V+ A+   +  TLE+LN+DGC  ITDASLV+I  NC  LS LD+SKCAI+D GI AL+ +++L LQ+LS++ CS V++KS+PA+  LG TL
Sbjct:  463 GKLCPQLEDIDLCGLKGITESGFLHLIQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTL 598          

HSP 2 Score: 43.1282 bits (100), Expect = 1.900e-46
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1
Query:  469 VGLNLQNCNSINSSTVARLVESLWRCDILS 558
            +GLNLQ C SI++STV  LVE L++CDILS
Sbjct:  599 LGLNLQQCRSISNSTVDFLVERLYKCDILS 628          

HSP 3 Score: 39.2762 bits (90), Expect = 1.900e-46
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    4 SIRNCPVFGNASLAMLGKLCP 66
            SIRNCP FG+A+LA +GKLCP
Sbjct:  447 SIRNCPGFGDANLAAIGKLCP 467          
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.544e-36
Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 2
Query:   53 GSCALQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 469
            G    QLQ V+L GL G+TD G+  LL+S   GLVKVNLS C+N++D  V A++  H  TLE LNLDGC+ IT+ASLVA+  NC  ++ LD+S   ++D GI AL S    LNLQVLS+  CS +++KS   ++KLG+TL
Sbjct:  454 GKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTL 593          

HSP 2 Score: 33.8834 bits (76), Expect = 1.544e-36
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    4 SIRNCPVFGNASLAMLGKLC 63
            SIR CP FG+ASLA LGK C
Sbjct:  438 SIRCCPGFGDASLAFLGKFC 457          
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.467e-13
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPA 445
            IT  GI  +  SC + L +++L GC ++TDE VLALA L+ + L++++L GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ +++  C  +++K++ A
Sbjct:  102 ITSEGIKAVASSC-SDLHEISLKGCCSVTDEGVLALA-LNCQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQVSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEA 214          
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 448
            +T  GI  +  SC   L + +L  C NLTDE V+ALA L+ + L+++NL GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ + +  C  +++ ++ A+
Sbjct:  102 VTSEGIKVVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAV 215          
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_BOVIN (Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 448
            IT  GI  +  SC   L + +L  C NLTDE VLALA L+   L++++L GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ + +  C  ++++++ A+
Sbjct:  102 ITSKGIKAVASSCSY-LHEASLKRCCNLTDEGVLALA-LNCRLLKIIDLGGCLGITDVSLQALGENCAFLQCVDFSATQVSDHGVVALVSGPCAKKLEEIHMGHCVNLTDEAVEAV 215          
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_HUMAN (Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 448
            +T  GI  +  SC   L + +L  C NLTDE V+ALA L+ + L++++L GC  ITD SL A+G NC FL  +D S   ++D G+ AL S      L+ + +  C  +++ ++ A+
Sbjct:  102 VTSEGIKAVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAV 215          
The following BLAST results are available for this feature:
BLAST of FC871041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EBF1_ARATH1.900e-4653.24EIN3-binding F-box protein 1 OS=Arabidopsis thalia... [more]
EBF2_ARATH1.544e-3651.43EIN3-binding F-box protein 2 OS=Arabidopsis thalia... [more]
AMN1_RAT5.467e-1339.13Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 ... [more]
AMN1_PONAB7.894e-1237.93Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 ... [more]
AMN1_BOVIN7.894e-1238.79Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV... [more]
AMN1_HUMAN2.297e-1137.07Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1BE07ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871041 ID=FC871041; Name=FC871041; organism=Citrus clementina; type=EST; length=843bp
GGTTCCATACGAAACTGCCCTGTTTTTGGAAATGCTAGCCTTGCCATGTT
GGGGAAGCTGTGCCCTTCAGCTTCAGCATGTAGACTTGAGTGGGCTATAT
GGAATAACAGATGTTGGGATTTTCCCACTTTTGGAAAGTTGCAAAGCAGG
ACTTGTGAAGGTGAATCTTAGTGGGTGCTTGAATCTGACAGATGAAGTAG
TTTTGGCCTTGGCTAGGCTACACAGTGAAACCCTCGAACTGTTGAACCTT
GATGGTTGCAGGAAGATTACAGATGCGAGTTTGGTTGCAATTGGAAACAA
CTGTATGTTCCTCAGTTATCTGGATGTCTCGAAGTGTGCAATCACTGATA
TGGGCATTTCTGCCCTATCTCATGCAGAGCAGCTCAATTTACAAGTCCTT
TCCTTGTCAAGTTGCTCTGAAGTATCAAACAAGAGCATGCCTGCCTTGAA
AAAATTAGGCAAGACTCTGTGGGATTAAATCTCCAAAACTGCAACTCAAT
TAATAGCAGCACAGTTGCTCGGCTTGTGGAAAGCCTGTGGAGATGCGATA
TTCTCTCCTAATTGGGATGGAAATGGAATGTCCGTCCCCTAAATTAAAGT
TGGGTACAGTATAAGAATTCTTACGGTCAGTTTACATTGGTAGCAGCAAT
CAGCATAGTGCTTTTCTTTTTCTGCCTCATCATAAGTGGTGGGCCTACAC
GTAGTTGAGAAGCAGCTTTGTTGTTTTCCGGGGAACTTTGGCAGATTACT
TCTTCAACCTTTTTTTGGCTGGGCTTCCTTTCCATGGAAGCCTGTTGCGA
CTTTTTAGCTTCCATTGGTGGGAGGCTGCCTAGTTCATGGCCA
back to top