FC871041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.900e-46 Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 2 Query: 53 GSCALQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 469 G QL+ +DL GL GIT+ G L++S LVK+N SGC NLTD V+ A+ + TLE+LN+DGC ITDASLV+I NC LS LD+SKCAI+D GI AL+ +++L LQ+LS++ CS V++KS+PA+ LG TL Sbjct: 463 GKLCPQLEDIDLCGLKGITESGFLHLIQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTL 598 HSP 2 Score: 43.1282 bits (100), Expect = 1.900e-46 Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1 Query: 469 VGLNLQNCNSINSSTVARLVESLWRCDILS 558 +GLNLQ C SI++STV LVE L++CDILS Sbjct: 599 LGLNLQQCRSISNSTVDFLVERLYKCDILS 628 HSP 3 Score: 39.2762 bits (90), Expect = 1.900e-46 Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 1 Query: 4 SIRNCPVFGNASLAMLGKLCP 66 SIRNCP FG+A+LA +GKLCP Sbjct: 447 SIRNCPGFGDANLAAIGKLCP 467
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.544e-36 Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 2 Query: 53 GSCALQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTL 469 G QLQ V+L GL G+TD G+ LL+S GLVKVNLS C+N++D V A++ H TLE LNLDGC+ IT+ASLVA+ NC ++ LD+S ++D GI AL S LNLQVLS+ CS +++KS ++KLG+TL Sbjct: 454 GKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTL 593 HSP 2 Score: 33.8834 bits (76), Expect = 1.544e-36 Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 4 SIRNCPVFGNASLAMLGKLC 63 SIR CP FG+ASLA LGK C Sbjct: 438 SIRCCPGFGDASLAFLGKFC 457
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.467e-13 Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 2 Query: 104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPA 445 IT GI + SC + L +++L GC ++TDE VLALA L+ + L++++L GC ITD SL A+G NC FL +D S ++D G+ AL S L+ +++ C +++K++ A Sbjct: 102 ITSEGIKAVASSC-SDLHEISLKGCCSVTDEGVLALA-LNCQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQVSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEA 214
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12 Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 2 Query: 104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 448 +T GI + SC L + +L C NLTDE V+ALA L+ + L+++NL GC ITD SL A+G NC FL +D S ++D G+ AL S L+ + + C +++ ++ A+ Sbjct: 102 VTSEGIKVVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAV 215
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_BOVIN (Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 2 Query: 104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 448 IT GI + SC L + +L C NLTDE VLALA L+ L++++L GC ITD SL A+G NC FL +D S ++D G+ AL S L+ + + C ++++++ A+ Sbjct: 102 ITSKGIKAVASSCSY-LHEASLKRCCNLTDEGVLALA-LNCRLLKIIDLGGCLGITDVSLQALGENCAFLQCVDFSATQVSDHGVVALVSGPCAKKLEEIHMGHCVNLTDEAVEAV 215
BLAST of FC871041 vs. ExPASy Swiss-Prot
Match: AMN1_HUMAN (Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4) HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11 Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 2 Query: 104 ITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLSSCSEVSNKSMPAL 448 +T GI + SC L + +L C NLTDE V+ALA L+ + L++++L GC ITD SL A+G NC FL +D S ++D G+ AL S L+ + + C +++ ++ A+ Sbjct: 102 VTSEGIKAVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAV 215 The following BLAST results are available for this feature:
BLAST of FC871041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871041 ID=FC871041; Name=FC871041; organism=Citrus clementina; type=EST; length=843bpback to top |