FC871057

Overview
NameFC871057
Unique NameFC871057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871057_ssr368 microsatellite FC871057_ssr368:368..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9308 contig Ccv1_Contig9308:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871057 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = -1 
Query:  500 RQDHSIYLLFLFLYAGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR 637
            R  H     F  +Y GQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR
Sbjct:  201 RDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR 246
[Close]
BLAST of FC871057 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = -1 
Query:  500 NLALPWRQDHSIYLLFLFLYAGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR 655
            N  L  R  H     F  +Y GQPKRHLLTTGWSLFVG+KRL+AGDSVLFIR
Sbjct:  180 NQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIR 231
[Close]
BLAST of FC871057 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = -1 
Query:  500 NLALPWRQDHSIYLLFLFLYAGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR 655
            N  L  R  H     F  +Y GQPKRHLLTTGWSLFVG+KRL+AGDSVLFIR
Sbjct:  180 NQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIR 231
The following BLAST results are available for this feature:
BLAST of FC871057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARFE_ARATH6.553e-1276.09Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFK_ORYSJ1.907e-1167.31Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI1.907e-1167.31Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1BF02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871057 ID=FC871057; Name=FC871057; organism=Citrus clementina; type=EST; length=748bp
GCGGGGTGACAAGAAGGAAAGAAAACAATAAATGAGAAAATCATATCAAT
TATAACATAAATAATTTTTTAAAATTCAAAACTACATGACTTATCTTGCA
CATAGTAACTATTTTTGGTCTGCTGAGGTTCAACTCAACATACAAAGACA
TTCAGTCATCTCGACTGAAGCATATATCCAATATTACTTGATTAAAGGTT
TCCCAAAGGAGAAACTGAAAGGTTTGCAAATACCCAAGGCGTATTGATCC
CAATGAATAAGTTATGCCAAGTTAACATTTTGAATATGTTAGAAGCGACA
ATCTATTTATGACTCGTACTAGAAGGAGCTACAGTTCCACAGCCAAGAGA
ATTACTGAGTGACATGGAATAAATAAATATCAAATACACAGCCAATGGTG
AAAAGTTGTGTACAGTGATAAGGTTTCTGCCTCCCAAAACTTCACTGAGA
AAAGCATTCAATAACTGTCAAACCATTATAACAGGATGACTACAAATTAC
CTGATAAACAAAACAGAATCACCTGCTCTAAGTCTTTTAGAACCAACAAA
CAAACTCCAACCAGTGGTAAGAAGGTGTCTCTTTGGCTGTCCTGCATACA
GGAACAGAAATAGAAGATAAATACTGTGATCCTGTCTCCATGGTAAAGCA
AGATTAAACTGAAACACATAGAACACTTGTTCTAGTCAACACCAAATTGA
TCATTGAAGTTAGAGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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