FC871062

Overview
NameFC871062
Unique NameFC871062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12968 contig Ccv1_Contig12968:48..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.301e-76
Identity = 138/151 (91.39%), Postives = 143/151 (94.70%), Query Frame = 2
Query:  356 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKK 808
            MAL NIGA NR DAFYRYKMP+MITKIEGRGNGIKTN+VNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTG SLVNG+HDTAKLAGLLE FIKKYVQCYGCGNPETEI+I+KTQMI LKCAACGFVSDVDMRDKL TFILKNPPE KK
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGAHDTAKLAGLLEVFIKKYVQCYGCGNPETEILISKTQMISLKCAACGFVSDVDMRDKLTTFILKNPPEQKK 151          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.638e-75
Identity = 133/152 (87.50%), Postives = 145/152 (95.39%), Query Frame = 2
Query:  356 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKA 811
            MAL NIGA NR DAFYRYKMP+M+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFGCELGAQSKFDEK GTSLVNG+HDT+KLAGLLENFIKKYVQCYGCGNPETEI+ITKTQM+QLKCAACGF+SDVDMRDKL +FILKNPPE KK+
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILITKTQMLQLKCAACGFLSDVDMRDKLTSFILKNPPEQKKS 152          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.271e-74
Identity = 134/151 (88.74%), Postives = 141/151 (93.38%), Query Frame = 2
Query:  356 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKK 808
            MAL NIGA N  DAFYRYKMP+M+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFGCELGAQSKFDEKTGTS VNG+H+TAKLAGLLE FIKKYVQCYGCGNPETEI+ITK QMIQLKCAACGFVSDVDMRDKL TFI+KNPPE KK
Sbjct:    1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKK 151          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.533e-73
Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = 2
Query:  356 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKK 808
            MAL NIGA NR DAFYRYKMPKM+TK EG+GNGIKTNI+N V+IAKALARP SYTTKYFGCELGAQSKFDEKTGTSLVNG+H+T+KLAGLLENFIKK+VQCYGCGNPETEIIITKTQM+ LKCAACGF+S+VDMRDKL  FILKNPPE KK
Sbjct:    1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIIITKTQMVNLKCAACGFISEVDMRDKLTNFILKNPPEQKK 151          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_RAT (Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 83/138 (60.14%), Postives = 102/138 (73.91%), Query Frame = 2
Query:  392 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPES 802
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE+
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 148          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_PONAB (Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 83/138 (60.14%), Postives = 102/138 (73.91%), Query Frame = 2
Query:  392 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPES 802
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE+
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 148          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_MOUSE (Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 83/138 (60.14%), Postives = 102/138 (73.91%), Query Frame = 2
Query:  392 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPES 802
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE+
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 148          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_HUMAN (Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 83/138 (60.14%), Postives = 102/138 (73.91%), Query Frame = 2
Query:  392 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPES 802
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++ +  K Q I   C ACG+   +D   KL TFILKNPPE+
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 148          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_CAEEL (Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.074e-42
Identity = 80/136 (58.82%), Postives = 99/136 (72.79%), Query Frame = 2
Query:  392 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPE 799
            D FYRYKMPK+  K+EG+GNGIKT I NM +IAKAL RP  Y TKYFGCELGAQ+ FD K    +VNG HD  KL  +L+ FIKK+V C  C NPET++ + K   I+ KC ACG   D+D++ KL+TFI+KNPP+
Sbjct:   11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDGFIKKFVLCKSCENPETQLFVRKNN-IKSKCKACGCSFDIDLKHKLSTFIMKNPPK 145          
BLAST of FC871062 vs. ExPASy Swiss-Prot
Match: IF5_DROME (Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.310e-40
Identity = 83/155 (53.55%), Postives = 107/155 (69.03%), Query Frame = 2
Query:  356 MALLNIGADNRG--DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKA 811
            MA +N+   NR   D FYRYKMP++  K+EG+GNGIKT +VNM ++A+A+ RPA+Y TKYFGCELGAQ+ FD K    +VNGSHD  KL  LL+ FI+K+V C  C NPET + ++ K Q I   C ACGF   + +  K+NTFI+KNPP    A
Sbjct:    1 MATVNV---NRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLCPECDNPETNLTVSAKNQTISQSCKACGFHGLLKVNHKVNTFIVKNPPSLNPA 152          
The following BLAST results are available for this feature:
BLAST of FC871062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
IF5_MAIZE3.301e-7691.39Eukaryotic translation initiation factor 5 OS=Zea ... [more]
IF5Y_ARATH1.638e-7587.50Probable eukaryotic translation initiation factor ... [more]
IF5_PHAVU5.271e-7488.74Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5Z_ARATH1.533e-7386.09Probable eukaryotic translation initiation factor ... [more]
IF5_RAT5.320e-4260.14Eukaryotic translation initiation factor 5 OS=Ratt... [more]
IF5_PONAB5.320e-4260.14Eukaryotic translation initiation factor 5 OS=Pong... [more]
IF5_MOUSE5.320e-4260.14Eukaryotic translation initiation factor 5 OS=Mus ... [more]
IF5_HUMAN5.320e-4260.14Eukaryotic translation initiation factor 5 OS=Homo... [more]
IF5_CAEEL9.074e-4258.82Eukaryotic translation initiation factor 5 OS=Caen... [more]
IF5_DROME1.310e-4053.55Eukaryotic translation initiation factor 5 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BF07ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1BF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871062 ID=FC871062; Name=FC871062; organism=Citrus clementina; type=EST; length=813bp
GGGGAACCTCCCTTCTTCGCATTCTGTGTTGTGCCAACACTTGAATCGTA
TTTTCAAGGTGAAGCACGTCAACATTGAAGTTTCTTTTATGTCCATACAG
GCCATTTCCTGTTTGGGATCGGTTGGGTTGCTTGGAGAATATTGTCCTTC
ATCCAGAAAAAAGATTAGACCTCTGTCTGAAAGATTTGGCTGTATGCATC
TCGTGCCATTTCAGGAATACCCAGAAGAGTTTTGTGGTTGCAGTCACTGG
CAACCTTTCCTAACCGCTGAACATTGTTGTTCTCTTGTGCAAGAAGTTTT
AGAAGACAGCACTATTTCCTACGCTTGACATTTGTTCTGTTTCTTTGAGG
TCAAGATGGCTTTGCTGAACATTGGTGCTGATAACCGGGGTGATGCCTTC
TACCGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGCCGTGGGAA
TGGCATCAAGACAAATATTGTGAACATGGTTGATATTGCAAAGGCTTTAG
CAAGGCCAGCTTCTTACACAACAAAATATTTCGGTTGTGAGCTTGGTGCA
CAATCTAAATTTGACGAGAAAACTGGTACTTCTCTTGTTAATGGATCTCA
TGATACTGCTAAGCTTGCAGGTCTTCTTGAGAACTTCATCAAGAAATATG
TTCAGTGTTATGGTTGTGGAAACCCAGAAACTGAGATAATAATCACTAAA
ACTCAGATGATCCAACTGAAGTGTGCTGCTTGTGGTTTTGTGTCTGATGT
TGATATGCGAGACAAGCTAAACACTTTCATTCTGAAGAACCCACCCGAGT
CAAAAAAGGCCTC
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