FC871065

Overview
NameFC871065
Unique NameFC871065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length277
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..277. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.162e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  283 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 373          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.643e-45
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLGDKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  273 ESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 363          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.351e-44
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  281 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 371          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.009e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKL DKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  274 ESGVIKLDDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 364          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.951e-43
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  280 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 370          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.951e-43
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  277 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.951e-43
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  277 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.264e-42
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLGD+QA+SKCALVYGQMNEPPG+RARVGLTGLTVAEHFRDAEG+DVLLF+D  FRFTQANSEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  269 ESGVIKLGDQQAESKCALVYGQMNEPPGSRARVGLTGLTVAEHFRDAEGEDVLLFVDKRFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 359          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.804e-42
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLGDK+ +SKC LVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLF+DNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  229 ESGVIKLGDKRGESKCTLVYGQMNEPPGARARVALTGLTVAEYFRDVEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 319          
BLAST of FC871065 vs. ExPASy Swiss-Prot
Match: ATPB_SCHGA (ATP synthase subunit beta, mitochondrial (Fragment) OS=Schizaphis graminum PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.077e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L DK   SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:   39 ESGVISLKDKT--SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 127          
The following BLAST results are available for this feature:
BLAST of FC871065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_HEVBR7.162e-46100.00ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_ORYSJ4.643e-4597.80ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL1.351e-4496.70ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBM_MAIZE3.009e-4496.70ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBO_ARATH1.951e-4394.51ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBN_ARATH1.951e-4394.51ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH1.951e-4394.51ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBM_DAUCA1.264e-4292.31ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBM_CHLRE4.804e-4291.21ATP synthase subunit beta, mitochondrial OS=Chlamy... [more]
ATPB_SCHGA6.077e-3787.91ATP synthase subunit beta, mitochondrial (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AC01ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871065 ID=FC871065; Name=FC871065; organism=Citrus clementina; type=EST; length=277bp
TTGAGAGTGGTGTTATTAAGCTTGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCCGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCTGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCA
ACCAACTTTGGCTACGGATCTTGGAGG
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