FC871069

Overview
NameFC871069
Unique NameFC871069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871069_ssr357 microsatellite FC871069_ssr357:357..368. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9317 contig Ccv1_Contig9317:133..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871069 vs. ExPASy Swiss-Prot
Match: ATG12_MEDTR (Putative autophagy-related protein 12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.259e-28
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 2
Query:    2 KFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 199
            KFKI+G+DKFAKVI+FL R L RE+LFVYVNSAFSPNPDELVIDLYNNFGFDGKL+VNYACSMAWG
Sbjct:   30 KFKIAGTDKFAKVIDFLRRQLHRESLFVYVNSAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95          
BLAST of FC871069 vs. ExPASy Swiss-Prot
Match: AT12B_ARATH (Autophagy-related protein 12b OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 KFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 199
            KFK+SGSDKFA VI+FL R L  ++LFVYVNSAFSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct:   29 KFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94          
BLAST of FC871069 vs. ExPASy Swiss-Prot
Match: AT12A_ARATH (Autophagy-related protein 12a OS=Arabidopsis thaliana GN=ATG12A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.050e-26
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 KFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 199
            KFKI G+DKFAKVI+FL R L  ++LFVYVNSAFSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct:   31 KFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96          
BLAST of FC871069 vs. ExPASy Swiss-Prot
Match: ATG12_ORYSJ (Autophagy-related protein 12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    2 KFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 199
            KFKI G++KF K+I+FL R + ++T+F+YVNSAFSPNPDEL+IDLYNNFG DG+L+VNYA SMAWG
Sbjct:   28 KFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93          
BLAST of FC871069 vs. ExPASy Swiss-Prot
Match: ATG12_ORYSI (Autophagy-related protein 12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    2 KFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 199
            KFKI G++KF K+I+FL R + ++T+F+YVNSAFSPNPDEL+IDLYNNFG DG+L+VNYA SMAWG
Sbjct:   28 KFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93          
BLAST of FC871069 vs. ExPASy Swiss-Prot
Match: ATG12_CRYNE (Autophagy-related protein 12 OS=Cryptococcus neoformans GN=ATG12 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 2
Query:    5 FKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 199
            FK +   KF  VI FL + LG    ++LF Y+N+AF+P PD+ V  LY +FG +G LIVNY+ + AWG
Sbjct:   38 FKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINAAFAPAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105          
The following BLAST results are available for this feature:
BLAST of FC871069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ATG12_MEDTR3.259e-2887.88Putative autophagy-related protein 12 OS=Medicago ... [more]
AT12B_ARATH1.788e-2683.33Autophagy-related protein 12b OS=Arabidopsis thali... [more]
AT12A_ARATH3.050e-2683.33Autophagy-related protein 12a OS=Arabidopsis thali... [more]
ATG12_ORYSJ3.157e-2371.21Autophagy-related protein 12 OS=Oryza sativa subsp... [more]
ATG12_ORYSI3.157e-2371.21Autophagy-related protein 12 OS=Oryza sativa subsp... [more]
ATG12_CRYNE6.175e-1148.53Autophagy-related protein 12 OS=Cryptococcus neofo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3AC05ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871069 ID=FC871069; Name=FC871069; organism=Citrus clementina; type=EST; length=596bp
AAAGTTCAAGATATCTGGATCTGATAAGTTTGCAAAAGTGATTGAATTCC
TATGCCGGCATCTTGGGCGGGAGACATTGTTTGTGTATGTCAATAGTGCA
TTTTCACCAAACCCTGATGAATTAGTGATTGATCTGTACAATAATTTTGG
CTTTGATGGTAAATTGATTGTCAATTATGCTTGTTCCATGGCGTGGGGCT
AATTTAATGTTACTGGTCTGCTGATGTTATATAGCTGCTCATACTTAGAG
AATTCAAGCTTTTTTCGCTTCCAGACAAGAAATGGAACACCATTATTTCT
TACGCTGAAGTCTCATTGGGATGACAGATTGATAGCAGAAAATTCAGATG
CTTACCATTATTATTATTTTTTTCTTTTCAAAATTCAATTTACCGTCATG
AGATTACAAGTTTTGAGTATATTCGATGTTAAGATGAAATGTTAATGTGG
TGCACATAATAATACTTCTTACTTCCATTTGCAATTATTGCCACCTCTGC
TTGCTATGTATCGGCAAGTTGGTCAGATTGTGTAAATATTATTCTTAATA
GATAGAATTGCCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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