FC871983

Overview
NameFC871983
Unique NameFC871983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9814 contig Ccv1_Contig9814:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS4_ARATH (RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.377e-63
Identity = 118/198 (59.60%), Postives = 150/198 (75.76%), Query Frame = 2
Query:   38 LQRWYWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 631
            L+R Y ALV+G P   +G ISAPL+KVVVD+GKS+RITV +N +++S QHA+T Y+VI+ S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+  + F  S+ N      +P      FGLDL+ G +  KQP LHLH K++ LPN+SQ ++K+Q+SS  D+S L+SLK  APLPSHMQ S+++L S
Sbjct:  278 LKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSP------FGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS3_ORYSJ (RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0520100 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.472e-50
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 2
Query:   50 YWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQK----VQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 631
            YWALV+GTP+  +G+ISAPL KV++D+GK++R+ + +   I  AQ AVT Y+V+ P+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW  H++WKQ    D    + +  P +     GL+++ GS+L K P LHLHC+EM +PN+++ +       +  +     K   L+ +AP+P+HM+ SW++++S
Sbjct:  277 YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 472          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS3_ARATH (RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.125e-49
Identity = 92/200 (46.00%), Postives = 137/200 (68.50%), Query Frame = 2
Query:   50 YWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQ------LSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 631
            YWALV+G+P+  +G+ISAPL KV++D+GK+DR+ +       ++Q A+T Y+V+ P  +G +W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW  H++WKQ    D+   +    P +     GLD++ GS+L K P LHLHC+EM LPN+++ +  +       L +G  + K + L+ VA +PSHM+ SW++++S
Sbjct:  279 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTG--KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 475          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS4_ORYSJ (RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0103500 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   20 DNEKRILQRWYWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 274
            D  + +LQR Y ALV+GTPR  KG++SAPL K+++ +GKS+R+T+  +    S Q A+T Y+VI+    GYTWL+L P TGRKHQ
Sbjct:  261 DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_XENTR (RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus tropicalis GN=rpusd4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 2
Query:   29 KRILQRWYWALVVGTPRCSKGVISAPLKKV------------------VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLH-FGLDLESGSILEKQPGLHLHCKEMTLPN 508
            +R + R YWAL +GTP   +G++  P+ +                   V + G  +R+ V       SA  AVTRY+ +  +  G + ++L P+TG KHQLRVH A  L  PI+GD+KY       W +  P         + P +  L   GL +     L     LHLH  ++TLP+
Sbjct:  130 EREVHRVYWALCLGTPSPREGILDIPIMEKETSGPQKHYKMALSPRFRVSEEGAVERVRVPR-----SAHEAVTRYRTLG-AASGASLVELHPITGVKHQLRVHLALGLNCPILGDHKYS-----HWGRLAP---------QKPPDSVLRALGLTVPQARTL----SLHLHAVQLTLPS 284          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_MOUSE (RNA pseudouridylate synthase domain-containing protein 4 OS=Mus musculus GN=Rpusd4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 60/211 (28.44%), Postives = 89/211 (42.18%), Query Frame = 2
Query:   32 RILQRWYWALVVGTPRCSKGVISAPLKKVVV-----------------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRS 613
            R +++ YWA+ V  P  S GV+  P+K+  V                 DNGK  ++    +  +     AVT+YQV+  S      ++L P+TG KHQLRVH +  L  PI+GD+KY       W +  P  L+  +  +         GL       +     LHLH +++ LP +               S+ E L L   LP    RS
Sbjct:  179 RQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTLSPSYRLDNGKMVKVRASRDAHV-----AVTQYQVLS-SASSSALVELQPVTGIKHQLRVHLSFGLDCPILGDHKYS-----DWTRLAPQKLSAGTLKK--------LGLQQSKARYIP----LHLHARQLILPALG--------------SRTEELLLTCKLPHFFARS 352          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_RAT (RNA pseudouridylate synthase domain-containing protein 4 OS=Rattus norvegicus GN=Rpusd4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 60/211 (28.44%), Postives = 88/211 (41.71%), Query Frame = 2
Query:   32 RILQRWYWALVVGTPRCSKGVISAPLKKVVV-----------------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRS 613
            R +++ YWA+ V  P  S GV+  P+ +  V                 DNGK  ++    +  +     AVT+YQV+  S      ++L P+TG KHQLRVH A  L  PI+GD+KY       W +  P  L+  +  +         GL       +     LHLH +++ LP +               S+ E L L   LP    RS
Sbjct:  179 RQVEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYS-----DWNRLAPQKLSAGTLKK--------LGLQQSKARYIP----LHLHARQLILPALG--------------SRTEELLLACKLPHFFARS 352          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_HUMAN (RNA pseudouridylate synthase domain-containing protein 4 OS=Homo sapiens GN=RPUSD4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 50/175 (28.57%), Postives = 81/175 (46.29%), Query Frame = 2
Query:   50 YWALVVGTPRCSKGVISAPL------------KKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQL 538
            YWA+ V  P  S GV+  P+            K  +  + + D   +V   +  +AQ AVT+YQV+  +      ++L P+TG KHQLRVH +  L  PI+GD+KY       W +  P  L+  +  +         GL+      +     LHLH +++ LP +    +++ L
Sbjct:  185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKK--------LGLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341          
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_BOVIN (RNA pseudouridylate synthase domain-containing protein 4 OS=Bos taurus GN=RPUSD4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 65/212 (30.66%), Postives = 90/212 (42.45%), Query Frame = 2
Query:   32 RILQRWYWALVVGTPRCSKGVISAPLKKVV-----------------VDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCD-----VSKLESLKLVAPLPSH 601
            R + + YWA+ V  P    GV+  P+ +                   +D+GK  R+    N     AQ AVT+YQV+  S      L+L P+TG KHQLRVH +  L  PI+GD+KY       W +  P  L+     +         GL       L     LHLH  ++TLP +    QK +L+  C      V+ L  L L  P   H
Sbjct:  179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSRN-----AQLAVTQYQVLSSSLSA-ALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKK--------LGLQQSKARHLP----LHLHACQLTLPALQP--QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 365          
The following BLAST results are available for this feature:
BLAST of FC871983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PUS4_ARATH3.377e-6359.60RNA pseudourine synthase 4, mitochondrial OS=Arabi... [more]
PUS3_ORYSJ1.472e-5046.97RNA pseudourine synthase 3, mitochondrial OS=Oryza... [more]
PUS3_ARATH2.125e-4946.00RNA pseudourine synthase 3, mitochondrial OS=Arabi... [more]
PUS4_ORYSJ1.137e-1851.76RNA pseudourine synthase 4, mitochondrial OS=Oryza... [more]
RUSD4_XENTR2.077e-1231.28RNA pseudouridylate synthase domain-containing pro... [more]
RUSD4_MOUSE7.894e-1228.44RNA pseudouridylate synthase domain-containing pro... [more]
RUSD4_RAT2.297e-1128.44RNA pseudouridylate synthase domain-containing pro... [more]
RUSD4_HUMAN6.682e-1128.57RNA pseudouridylate synthase domain-containing pro... [more]
RUSD4_BOVIN6.682e-1130.66RNA pseudouridylate synthase domain-containing pro... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BA10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871983 ID=FC871983; Name=FC871983; organism=Citrus clementina; type=EST; length=842bp
GGGATCAAAAGAGGATAATGATAACGAGAAAAGAATCTTGCAAAGATGGT
ATTGGGCCCTTGTTGTTGGAACTCCAAGGTGCTCGAAGGGGGTGATTTCA
GCACCACTAAAAAAGGTGGTGGTGGACAATGGAAAGTCCGACCGAATCAC
AGTGGTTAACAATGATCAAATTATGTCAGCTCAGCATGCAGTAACAAGAT
ATCAAGTGATTAAACCTTCATGTCATGGTTACACATGGTTAAAATTGTCT
CCTCTCACTGGTAGAAAACATCAGCTTCGAGTACATTGTGCTGAGGTATT
AGGAACACCTATAGTTGGAGACTATAAATACGGGTGGCAAACTCATAGGA
AGTGGAAACAATTCCATCCATCTGATCTTAATAAGGACTCAAATGACGAG
ACTCCGAAAGAAAAAACTCTTCACTTTGGCCTTGATTTGGAGAGCGGGAG
TATCTTGGAAAAGCAACCTGGGCTGCATCTTCACTGTAAGGAAATGACTT
TGCCAAACGTTTCTCAAGCTATACAAAAAGTACAATTATCTTCAGGATGT
GATGTTTCCAAACTAGAAAGTCTCAAGTTGGTTGCACCTTTGCCTTCACA
CATGCAAAGAAGTTGGGATGTTTTGAACTCTTGAGCTACAAGTATATCAC
ACAGAAGTCCACACAAGATTTCCTTGCTGAGTTTGCTGGATTTCTTAAAT
GTGATGTTGATGTGGGGGTCTAAATTAGGGTATTTAAAATAGTGCTAAAA
ATCAGTTTAAATACCAAACTTTTAGCACATATCTTATGGATACCTCTAGA
GTTTTAGATTATTCCTTGAGAGATTGTAAAATCTCAATTCCT
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