FC871983
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS4_ARATH (RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.377e-63 Identity = 118/198 (59.60%), Postives = 150/198 (75.76%), Query Frame = 2 Query: 38 LQRWYWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 631 L+R Y ALV+G P +G ISAPL+KVVVD+GKS+RITV +N +++S QHA+T Y+VI+ S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ + F S+ N +P FGLDL+ G + KQP LHLH K++ LPN+SQ ++K+Q+SS D+S L+SLK APLPSHMQ S+++L S Sbjct: 278 LKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSP------FGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS3_ORYSJ (RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0520100 PE=2 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.472e-50 Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 2 Query: 50 YWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQK----VQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 631 YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + + I AQ AVT Y+V+ P+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D + + P + GL+++ GS+L K P LHLHC+EM +PN+++ + + + K L+ +AP+P+HM+ SW++++S Sbjct: 277 YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 472
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS3_ARATH (RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.125e-49 Identity = 92/200 (46.00%), Postives = 137/200 (68.50%), Query Frame = 2 Query: 50 YWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQ------LSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 631 YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ + ++Q A+T Y+V+ P +G +W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D+ + P + GLD++ GS+L K P LHLHC+EM LPN+++ + + L +G + K + L+ VA +PSHM+ SW++++S Sbjct: 279 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTG--KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 475
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: PUS4_ORYSJ (RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0103500 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18 Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 20 DNEKRILQRWYWALVVGTPRCSKGVISAPLKKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 274 D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+T+ + S Q A+T Y+VI+ GYTWL+L P TGRKHQ Sbjct: 261 DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_XENTR (RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus tropicalis GN=rpusd4 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12 Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 2 Query: 29 KRILQRWYWALVVGTPRCSKGVISAPLKKV------------------VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLH-FGLDLESGSILEKQPGLHLHCKEMTLPN 508 +R + R YWAL +GTP +G++ P+ + V + G +R+ V SA AVTRY+ + + G + ++L P+TG KHQLRVH A L PI+GD+KY W + P + P + L GL + L LHLH ++TLP+ Sbjct: 130 EREVHRVYWALCLGTPSPREGILDIPIMEKETSGPQKHYKMALSPRFRVSEEGAVERVRVPR-----SAHEAVTRYRTLG-AASGASLVELHPITGVKHQLRVHLALGLNCPILGDHKYS-----HWGRLAP---------QKPPDSVLRALGLTVPQARTL----SLHLHAVQLTLPS 284
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_MOUSE (RNA pseudouridylate synthase domain-containing protein 4 OS=Mus musculus GN=Rpusd4 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12 Identity = 60/211 (28.44%), Postives = 89/211 (42.18%), Query Frame = 2 Query: 32 RILQRWYWALVVGTPRCSKGVISAPLKKVVV-----------------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRS 613 R +++ YWA+ V P S GV+ P+K+ V DNGK ++ + + AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W + P L+ + + GL + LHLH +++ LP + S+ E L L LP RS Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTLSPSYRLDNGKMVKVRASRDAHV-----AVTQYQVLS-SASSSALVELQPVTGIKHQLRVHLSFGLDCPILGDHKYS-----DWTRLAPQKLSAGTLKK--------LGLQQSKARYIP----LHLHARQLILPALG--------------SRTEELLLTCKLPHFFARS 352
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_RAT (RNA pseudouridylate synthase domain-containing protein 4 OS=Rattus norvegicus GN=Rpusd4 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11 Identity = 60/211 (28.44%), Postives = 88/211 (41.71%), Query Frame = 2 Query: 32 RILQRWYWALVVGTPRCSKGVISAPLKKVVV-----------------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRS 613 R +++ YWA+ V P S GV+ P+ + V DNGK ++ + + AVT+YQV+ S ++L P+TG KHQLRVH A L PI+GD+KY W + P L+ + + GL + LHLH +++ LP + S+ E L L LP RS Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYS-----DWNRLAPQKLSAGTLKK--------LGLQQSKARYIP----LHLHARQLILPALG--------------SRTEELLLACKLPHFFARS 352
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_HUMAN (RNA pseudouridylate synthase domain-containing protein 4 OS=Homo sapiens GN=RPUSD4 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11 Identity = 50/175 (28.57%), Postives = 81/175 (46.29%), Query Frame = 2 Query: 50 YWALVVGTPRCSKGVISAPL------------KKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQL 538 YWA+ V P S GV+ P+ K + + + D +V + +AQ AVT+YQV+ + ++L P+TG KHQLRVH + L PI+GD+KY W + P L+ + + GL+ + LHLH +++ LP + +++ L Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKK--------LGLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
BLAST of FC871983 vs. ExPASy Swiss-Prot
Match: RUSD4_BOVIN (RNA pseudouridylate synthase domain-containing protein 4 OS=Bos taurus GN=RPUSD4 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11 Identity = 65/212 (30.66%), Postives = 90/212 (42.45%), Query Frame = 2 Query: 32 RILQRWYWALVVGTPRCSKGVISAPLKKVV-----------------VDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCD-----VSKLESLKLVAPLPSH 601 R + + YWA+ V P GV+ P+ + +D+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY W + P L+ + GL L LHLH ++TLP + QK +L+ C V+ L L L P H Sbjct: 179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSRN-----AQLAVTQYQVLSSSLSA-ALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKK--------LGLQQSKARHLP----LHLHACQLTLPALQP--QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 365 The following BLAST results are available for this feature:
BLAST of FC871983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871983 ID=FC871983; Name=FC871983; organism=Citrus clementina; type=EST; length=842bpback to top |