FC871992

Overview
NameFC871992
Unique NameFC871992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2222..2849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.896e-70
Identity = 125/179 (69.83%), Postives = 142/179 (79.33%), Query Frame = 3
Query:    3 GDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPY 539
            GDKK EPWWPVLKT  DLI ++TTI WVTSGHHAAVNFGQY YGGYFPNRPTT R  + TEDP+DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+NR GAG+V YELLKP SE GVTG GVPY
Sbjct:  714 GDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.487e-66
Identity = 114/177 (64.41%), Postives = 141/177 (79.66%), Query Frame = 3
Query:    6 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            DKK EPWWPV  T ++L++I+T I+WVTSGHHAAVNFGQY Y GYFPNRPT  R NI  E+  D++ K F+ +PE  LL + PSQ+QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID RN +P+ +NR GAG+VPYELLKPFSEPGVTG+G+P
Sbjct:  715 DKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.153e-57
Identity = 104/179 (58.10%), Postives = 129/179 (72.07%), Query Frame = 3
Query:    3 GDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            GDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLSTHS DEEYLG E    W  D  + AA+  F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  758 GDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.811e-57
Identity = 103/179 (57.54%), Postives = 130/179 (72.63%), Query Frame = 3
Query:    3 GDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            GDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLS+HS DEEYLG E    W  D  + AA++ F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  741 GDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.158e-49
Identity = 93/179 (51.96%), Postives = 125/179 (69.83%), Query Frame = 3
Query:    6 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYL--GKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            DKK EPWWP L T +DL +I+T ++W+ SG HAA+NFGQY +GGY PNRPT  R  I  E  +D  ++ F+  P+ + L + P+Q+QATKVMA+ + LSTHSPDEEYL   +E++  W +D  +   F KF  +L+++E  I+ RN D KL+NR GAGM PYELL P S  GVTG+G+P
Sbjct:  736 DKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.807e-49
Identity = 94/165 (56.97%), Postives = 119/165 (72.12%), Query Frame = 3
Query:    6 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 500
            DK+ EPWWP L + ++L + + TI+WVTSGHHAAVNFGQY   GY PNRPT AR N+ TE   D+  + F+E PE  LL+TFPSQ Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D  N DP  +NR+GAGMVPY LL+P
Sbjct:  746 DKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDM-RDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP 909          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.710e-46
Identity = 91/178 (51.12%), Postives = 118/178 (66.29%), Query Frame = 3
Query:    6 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            D +   WWP L T +DL+ +ITTI+W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+E P+    ++ PS +Q TK MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  ID RN DP  RNR GAG++PYEL+ P SEPGVT +GVP
Sbjct:  746 DHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.500e-45
Identity = 90/178 (50.56%), Postives = 116/178 (65.17%), Query Frame = 3
Query:    6 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            D +   WWP L T  DL+ I+TT++W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+  PE    ++ PS  Q +K MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  I+ RNADP  RNR GAG++PYELL P SEPGVT +GVP
Sbjct:  739 DLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.769e-43
Identity = 85/177 (48.02%), Postives = 108/177 (61.02%), Query Frame = 3
Query:    6 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            DK+  PWWP L TP DL  ++TT+VW+ S  HAA+NFGQY  GGY PNRP   R  +  E   D ++   +  P    L+  PS  Q T  M ++D LSTHS DEEYLG+  + AW  DP   AA  +F   +   E  I+ RNADP  RNR GAG++PYEL+ P S PG+T +GVP
Sbjct:  720 DKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAE--GDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVP 894          
BLAST of FC871992 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.018e-43
Identity = 89/181 (49.17%), Postives = 109/181 (60.22%), Query Frame = 3
Query:    3 GDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGK---EIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 536
            GD +H PWWP L TP DL  I+TT+VW+ S  HAA+NFGQY  GGY PNRP   R  +   +    ++  FL  P    LN  P  ++ATK MA++D LSTHSPDEEYLG+   E    W  D    AA   F   +   E  I+ RNAD   +NR GAG++PYELL P S PGVT +GVP
Sbjct:  733 GDLRHAPWWPPLSTPVDLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVP 913          
The following BLAST results are available for this feature:
BLAST of FC871992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LOX2_ARATH2.896e-7069.83Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU1.487e-6664.41Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ2.153e-5758.10Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ2.811e-5757.54Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX6_ARATH2.158e-4951.96Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX21_HORVU4.807e-4956.97Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX4_ARATH1.710e-4651.12Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH5.500e-4550.56Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ1.769e-4348.02Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ3.018e-4349.17Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871992 ID=FC871992; Name=FC871992; organism=Citrus clementina; type=EST; length=628bp
GGGGTGACAAGAAACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAG
GATTTAATTGAAATCATCACAACTATTGTTTGGGTAACATCTGGTCACCA
CGCAGCTGTTAACTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATA
GGCCAACCACTGCAAGATGCAACATTGCCACTGAAGATCCATCTGATGAA
CAATGGAAATTCTTCCTTGAAAAACCTGAAAATGCACTTTTGAATACCTT
CCCTTCCCAGATTCAAGCTACTAAAGTTATGGCTATTCTTGATGTTTTAT
CGACTCATTCTCCTGATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCA
TGGCGTGAGGATCCGGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAA
GTTAATGGAGCTTGAAGGGATTATTGATGCAAGGAATGCAGATCCCAAGT
TGAGGAATAGAAATGGAGCTGGGATGGTGCCATATGAGCTCTTGAAGCCA
TTTTCGGAACCTGGTGTTACAGGAAAAGGAGTTCCGTACAGCATCTCTAT
CTAGAGTTGAAAATGTTGTTGCAATCGCTCGAATGTTGTGTCAATAAAAA
CTTTTGAGAATGAGTTCAAGAATGAATC
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